Automatic reconstruction of a bacterial regulatory network using Natural Language Processing

por Rodríguez-Penagos, Carlos, Salgado, Heladia, Martínez-Flores, Irma, Collado-Vides, Julio
Publicado 2007

Anti-Sigma Factors in E. coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability

por Treviño-Quintanilla, Luis Gerardo, Freyre-González, Julio Augusto, Martínez-Flores, Irma
Publicado 2013

Genomic Analysis Reveals the Genetic Determinants Associated With Antibiotic Resistance in the Zoonotic Pathogen Campylobacter spp. Distributed Globally

por Rivera-Mendoza, Daniel, Martínez-Flores, Irma, Santamaría, Rosa I., Lozano, Luis, Bustamante, Víctor H., Pérez-Morales, Deyanira
Publicado 2020

In silico clustering of Salmonella global gene expression data reveals novel genes co-regulated with the SPI-1 virulence genes through HilD

por Martínez-Flores, Irma, Pérez-Morales, Deyanira, Sánchez-Pérez, Mishael, Paredes, Claudia C., Collado-Vides, Julio, Salgado, Heladia, Bustamante, Víctor H.
Publicado 2016

The transcriptional regulator SsrB is involved in a molecular switch controlling virulence lifestyles of Salmonella

por Pérez-Morales, Deyanira, Banda, María M., Chau, N. Y Elizabeth, Salgado, Heladia, Martínez-Flores, Irma, Ibarra, J. Antonio, Ilyas, Bushra, Coombes, Brian K., Bustamante, Víctor H.
Publicado 2017

Phylogenomic Rhizobium Species Are Structured by a Continuum of Diversity and Genomic Clusters

por González, Víctor, Santamaría, Rosa Isela, Bustos, Patricia, Pérez-Carrascal, Olga María, Vinuesa, Pablo, Juárez, Soledad, Martínez-Flores, Irma, Cevallos, Miguel Ángel, Brom, Susana, Martínez-Romero, Esperanza, Romero, David
Publicado 2019

Genomic diversity of prevalent Staphylococcus epidermidis multidrug-resistant strains isolated from a Children’s Hospital in México City in an eight-years survey

por Cabrera-Contreras, Roberto, Santamaría, Rosa I., Bustos, Patricia, Martínez-Flores, Irma, Meléndez-Herrada, Enrique, Morelos-Ramírez, Rubén, Barbosa-Amezcua, Martín, González-Covarrubias, Vanessa, Silva-Herzog, Eugenia, Soberón, Xavier, González, Víctor
Publicado 2019

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

por Salgado, Heladia, Gama-Castro, Socorro, Peralta-Gil, Martín, Díaz-Peredo, Edgar, Sánchez-Solano, Fabiola, Santos-Zavaleta, Alberto, Martínez-Flores, Irma, Jiménez-Jacinto, Verónica, Bonavides-Martínez, César, Segura-Salazar, Juan, Martínez-Antonio, Agustino, Collado-Vides, Julio
Publicado 2006

Complete Genome Sequences of Eight Rhizobium Symbionts Associated with Common Bean (Phaseolus vulgaris)

por Santamaría, Rosa Isela, Bustos, Patricia, Pérez-Carrascal, Olga María, Miranda-Sánchez, Fabiola, Vinuesa, Pablo, Martínez-Flores, Irma, Juárez, Soledad, Lozano, Luis, Martínez-Romero, Esperanza, Cevallos, Miguel Ángel, Romero, David, Dávila, Guillermo, Ormeño-Orrillo, Ernesto, González, Víctor
Publicado 2017

Complete Genome Sequences of Three Rhizobium gallicum Symbionts Associated with Common Bean (Phaseolus vulgaris)

por Bustos, Patricia, Santamaría, Rosa Isela, Pérez-Carrascal, Olga María, Acosta, José Luis, Lozano, Luis, Juárez, Soledad, Martínez-Flores, Irma, Martínez-Romero, Esperanza, Cevallos, Miguel Ángel, Romero, David, Dávila, Guillermo, Vinuesa, Pablo, Miranda, Fabiola, Ormeño, Ernesto, González, Víctor
Publicado 2017

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

por Gama-Castro, Socorro, Jiménez-Jacinto, Verónica, Peralta-Gil, Martín, Santos-Zavaleta, Alberto, Peñaloza-Spinola, Mónica I., Contreras-Moreira, Bruno, Segura-Salazar, Juan, Muñiz-Rascado, Luis, Martínez-Flores, Irma, Salgado, Heladia, Bonavides-Martínez, César, Abreu-Goodger, Cei, Rodríguez-Penagos, Carlos, Miranda-Ríos, Juan, Morett, Enrique, Merino, Enrique, Huerta, Araceli M., Treviño-Quintanilla, Luis, Collado-Vides, Julio
Publicado 2008

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

por Gama-Castro, Socorro, Salgado, Heladia, Santos-Zavaleta, Alberto, Ledezma-Tejeida, Daniela, Muñiz-Rascado, Luis, García-Sotelo, Jair Santiago, Alquicira-Hernández, Kevin, Martínez-Flores, Irma, Pannier, Lucia, Castro-Mondragón, Jaime Abraham, Medina-Rivera, Alejandra, Solano-Lira, Hilda, Bonavides-Martínez, César, Pérez-Rueda, Ernesto, Alquicira-Hernández, Shirley, Porrón-Sotelo, Liliana, López-Fuentes, Alejandra, Hernández-Koutoucheva, Anastasia, Moral-Chávez, Víctor Del, Rinaldi, Fabio, Collado-Vides, Julio
Publicado 2016

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

por Gama-Castro, Socorro, Salgado, Heladia, Peralta-Gil, Martin, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, Solano-Lira, Hilda, Jimenez-Jacinto, Verónica, Weiss, Verena, García-Sotelo, Jair S., López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Alquicira-Hernández, Shirley, Medina-Rivera, Alejandra, Martínez-Flores, Irma, Alquicira-Hernández, Kevin, Martínez-Adame, Ruth, Bonavides-Martínez, César, Miranda-Ríos, Juan, Huerta, Araceli M., Mendoza-Vargas, Alfredo, Collado-Torres, Leonardo, Taboada, Blanca, Vega-Alvarado, Leticia, Olvera, Maricela, Olvera, Leticia, Grande, Ricardo, Morett, Enrique, Collado-Vides, Julio
Publicado 2011

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

por Salgado, Heladia, Peralta-Gil, Martin, Gama-Castro, Socorro, Santos-Zavaleta, Alberto, Muñiz-Rascado, Luis, García-Sotelo, Jair S., Weiss, Verena, Solano-Lira, Hilda, Martínez-Flores, Irma, Medina-Rivera, Alejandra, Salgado-Osorio, Gerardo, Alquicira-Hernández, Shirley, Alquicira-Hernández, Kevin, López-Fuentes, Alejandra, Porrón-Sotelo, Liliana, Huerta, Araceli M., Bonavides-Martínez, César, Balderas-Martínez, Yalbi I., Pannier, Lucia, Olvera, Maricela, Labastida, Aurora, Jiménez-Jacinto, Verónica, Vega-Alvarado, Leticia, del Moral-Chávez, Victor, Hernández-Alvarez, Alfredo, Morett, Enrique, Collado-Vides, Julio
Publicado 2013

BioPAX – A community standard for pathway data sharing

por Demir, Emek, Cary, Michael P., Paley, Suzanne, Fukuda, Ken, Lemer, Christian, Vastrik, Imre, Wu, Guanming, D’Eustachio, Peter, Schaefer, Carl, Luciano, Joanne, Schacherer, Frank, Martinez-Flores, Irma, Hu, Zhenjun, Jimenez-Jacinto, Veronica, Joshi-Tope, Geeta, Kandasamy, Kumaran, Lopez-Fuentes, Alejandra C., Mi, Huaiyu, Pichler, Elgar, Rodchenkov, Igor, Splendiani, Andrea, Tkachev, Sasha, Zucker, Jeremy, Gopinath, Gopal, Rajasimha, Harsha, Ramakrishnan, Ranjani, Shah, Imran, Syed, Mustafa, Anwar, Nadia, Babur, Ozgun, Blinov, Michael, Brauner, Erik, Corwin, Dan, Donaldson, Sylva, Gibbons, Frank, Goldberg, Robert, Hornbeck, Peter, Luna, Augustin, Murray-Rust, Peter, Neumann, Eric, Reubenacker, Oliver, Samwald, Matthias, van Iersel, Martijn, Wimalaratne, Sarala, Allen, Keith, Braun, Burk, Whirl-Carrillo, Michelle, Dahlquist, Kam, Finney, Andrew, Gillespie, Marc, Glass, Elizabeth, Gong, Li, Haw, Robin, Honig, Michael, Hubaut, Olivier, Kane, David, Krupa, Shiva, Kutmon, Martina, Leonard, Julie, Marks, Debbie, Merberg, David, Petri, Victoria, Pico, Alex, Ravenscroft, Dean, Ren, Liya, Shah, Nigam, Sunshine, Margot, Tang, Rebecca, Whaley, Ryan, Letovksy, Stan, Buetow, Kenneth H., Rzhetsky, Andrey, Schachter, Vincent, Sobral, Bruno S., Dogrusoz, Ugur, McWeeney, Shannon, Aladjem, Mirit, Birney, Ewan, Collado-Vides, Julio, Goto, Susumu, Hucka, Michael, Le Novère, Nicolas, Maltsev, Natalia, Pandey, Akhilesh, Thomas, Paul, Wingender, Edgar, Karp, Peter D., Sander, Chris, Bader, Gary D.
Publicado 2010