Recurring cluster and operon assembly for Phenylacetate degradation genes

por Martin, Fergal J, McInerney, James O
Publicado 2009

Accessing Livestock Resources in Ensembl

por Martin, Fergal J., Gall, Astrid, Szpak, Michal, Flicek, Paul
Publicado 2021

Divergence in gene expression within and between two closely related flycatcher species

por Uebbing, Severin, Künstner, Axel, Mäkinen, Hannu, Backström, Niclas, Bolivar, Paulina, Burri, Reto, Dutoit, Ludovic, Mugal, Carina F., Nater, Alexander, Aken, Bronwen, Flicek, Paul, Martin, Fergal J., Searle, Stephen M. J., Ellegren, Hans
Publicado 2016

Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle

por Low, Wai Yee, Rosen, Benjamin D., Ren, Yan, Bickhart, Derek M., To, Thu-Hien, Martin, Fergal J., Billis, Konstantinos, Sonstegard, Tad S., Sullivan, Shawn T., Hiendleder, Stefan, Williams, John L., Heaton, Michael P., Smith, Timothy P. L.
Publicado 2022

A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection

por Pettersson, Mats E., Rochus, Christina M., Han, Fan, Chen, Junfeng, Hill, Jason, Wallerman, Ola, Fan, Guangyi, Hong, Xiaoning, Xu, Qiwu, Zhang, He, Liu, Shanshan, Liu, Xin, Haggerty, Leanne, Hunt, Toby, Martin, Fergal J., Flicek, Paul, Bunikis, Ignas, Folkvord, Arild, Andersson, Leif
Publicado 2019

The Ensembl gene annotation system

por Aken, Bronwen L., Ayling, Sarah, Barrell, Daniel, Clarke, Laura, Curwen, Valery, Fairley, Susan, Fernandez Banet, Julio, Billis, Konstantinos, García Girón, Carlos, Hourlier, Thibaut, Howe, Kevin, Kähäri, Andreas, Kokocinski, Felix, Martin, Fergal J., Murphy, Daniel N., Nag, Rishi, Ruffier, Magali, Schuster, Michael, Tang, Y. Amy, Vogel, Jan-Hinnerk, White, Simon, Zadissa, Amonida, Flicek, Paul, Searle, Stephen M. J.
Publicado 2016

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

por Low, Wai Yee, Tearle, Rick, Liu, Ruijie, Koren, Sergey, Rhie, Arang, Bickhart, Derek M., Rosen, Benjamin D., Kronenberg, Zev N., Kingan, Sarah B., Tseng, Elizabeth, Thibaud-Nissen, Françoise, Martin, Fergal J., Billis, Konstantinos, Ghurye, Jay, Hastie, Alex R., Lee, Joyce, Pang, Andy W. C., Heaton, Michael P., Phillippy, Adam M., Hiendleder, Stefan, Smith, Timothy P. L., Williams, John L.
Publicado 2020

The evolution of two transmissible cancers in Tasmanian devils

por Stammnitz, Maximilian R., Gori, Kevin, Kwon, Young Mi, Harry, Ed, Martin, Fergal J., Billis, Konstantinos, Cheng, Yuanyuan, Baez-Ortega, Adrian, Chow, William, Comte, Sebastien, Eggertsson, Hannes, Fox, Samantha, Hamede, Rodrigo, Jones, Menna, Lazenby, Billie, Peck, Sarah, Pye, Ruth, Quail, Michael A., Swift, Kate, Wang, Jinhong, Wood, Jonathan, Howe, Kerstin, Stratton, Michael R., Ning, Zemin, Murchison, Elizabeth P.
Publicado 2023

Cell type-specific novel long non-coding RNA and circular RNA in the BLUEPRINT hematopoietic transcriptomes atlas

por Grassi, Luigi, Izuogu, Osagie G., Jorge, Natasha A.N., Seyres, Denis, Bustamante, Mariona, Burden, Frances, Farrow, Samantha, Farahi, Neda, Martin, Fergal J., Frankish, Adam, Mudge, Jonathan M., Kostadima, Myrto, Petersen, Romina, Lambourne, John J., Rowlston, Sophia, Martin-Rendon, Enca, Clarke, Laura, Downes, Kate, Estivill, Xavier, Flicek, Paul, Martens, Joost H.A., Yaspo, Marie-Laure, Stunnenberg, Hendrik G., Ouwehand, Willem H., Passetti, Fabio, Turro, Ernest, Frontini, Mattia
Publicado 2020

The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data

por De Silva, Nishadi H, Bhai, Jyothish, Chakiachvili, Marc, Contreras-Moreira, Bruno, Cummins, Carla, Frankish, Adam, Gall, Astrid, Genez, Thiago, Howe, Kevin L, Hunt, Sarah E, Martin, Fergal J, Moore, Benjamin, Ogeh, Denye, Parker, Anne, Parton, Andrew, Ruffier, Magali, Sakthivel, Manoj Pandian, Sheppard, Dan, Tate, John, Thormann, Anja, Thybert, David, Trevanion, Stephen J, Winterbottom, Andrea, Zerbino, Daniel R, Finn, Robert D, Flicek, Paul, Yates, Andrew D
Publicado 2021

Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors

por Campbell, Lahcen I., Nwezeobi, Joachim, van Brunschot, Sharon L., Kaweesi, Tadeo, Seal, Susan E., Swamy, Rekha A. R., Namuddu, Annet, Maslen, Gareth L., Mugerwa, Habibu, Armean, Irina M., Haggerty, Leanne, Martin, Fergal J., Malka, Osnat, Santos-Garcia, Diego, Juravel, Ksenia, Morin, Shai, Stephens, Michael E., Muhindira, Paul Visendi, Kersey, Paul J., Maruthi, M. N., Omongo, Christopher A., Navas-Castillo, Jesús, Fiallo-Olivé, Elvira, Mohammed, Ibrahim Umar, Wang, Hua-Ling, Onyeka, Joseph, Alicai, Titus, Colvin, John
Publicado 2023

Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation

por Pujar, Shashikant, O’Leary, Nuala A, Farrell, Catherine M, Loveland, Jane E, Mudge, Jonathan M, Wallin, Craig, Girón, Carlos G, Diekhans, Mark, Barnes, If, Bennett, Ruth, Berry, Andrew E, Cox, Eric, Davidson, Claire, Goldfarb, Tamara, Gonzalez, Jose M, Hunt, Toby, Jackson, John, Joardar, Vinita, Kay, Mike P, Kodali, Vamsi K, Martin, Fergal J, McAndrews, Monica, McGarvey, Kelly M, Murphy, Michael, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Seal, Ruth L, Suner, Marie-Marthe, Webb, David, Zhu, Sophia, Aken, Bronwen L, Bruford, Elspeth A, Bult, Carol J, Frankish, Adam, Murphy, Terence, Pruitt, Kim D
Publicado 2018

The comparative genomics and complex population history of Papio baboons

por Rogers, Jeffrey, Raveendran, Muthuswamy, Harris, R. Alan, Mailund, Thomas, Leppälä, Kalle, Athanasiadis, Georgios, Schierup, Mikkel Heide, Cheng, Jade, Munch, Kasper, Walker, Jerilyn A., Konkel, Miriam K., Jordan, Vallmer, Steely, Cody J., Beckstrom, Thomas O., Bergey, Christina, Burrell, Andrew, Schrempf, Dominik, Noll, Angela, Kothe, Maximillian, Kopp, Gisela H., Liu, Yue, Murali, Shwetha, Billis, Konstantinos, Martin, Fergal J., Muffato, Matthieu, Cox, Laura, Else, James, Disotell, Todd, Muzny, Donna M., Phillips-Conroy, Jane, Aken, Bronwen, Eichler, Evan E., Marques-Bonet, Tomas, Kosiol, Carolin, Batzer, Mark A., Hahn, Matthew W., Tung, Jenny, Zinner, Dietmar, Roos, Christian, Jolly, Clifford J., Gibbs, Richard A., Worley, Kim C.
Publicado 2019

An improved pig reference genome sequence to enable pig genetics and genomics research

por Warr, Amanda, Affara, Nabeel, Aken, Bronwen, Beiki, Hamid, Bickhart, Derek M, Billis, Konstantinos, Chow, William, Eory, Lel, Finlayson, Heather A, Flicek, Paul, Girón, Carlos G, Griffin, Darren K, Hall, Richard, Hannum, Greg, Hourlier, Thibaut, Howe, Kerstin, Hume, David A, Izuogu, Osagie, Kim, Kristi, Koren, Sergey, Liu, Haibou, Manchanda, Nancy, Martin, Fergal J, Nonneman, Dan J, O'Connor, Rebecca E, Phillippy, Adam M, Rohrer, Gary A, Rosen, Benjamin D, Rund, Laurie A, Sargent, Carole A, Schook, Lawrence B, Schroeder, Steven G, Schwartz, Ariel S, Skinner, Ben M, Talbot, Richard, Tseng, Elizabeth, Tuggle, Christopher K, Watson, Mick, Smith, Timothy P L, Archibald, Alan L
Publicado 2020

Population genomics of the critically endangered kākāpō

por Dussex, Nicolas, van der Valk, Tom, Morales, Hernán E., Wheat, Christopher W., Díez-del-Molino, David, von Seth, Johanna, Foster, Yasmin, Kutschera, Verena E., Guschanski, Katerina, Rhie, Arang, Phillippy, Adam M., Korlach, Jonas, Howe, Kerstin, Chow, William, Pelan, Sarah, Mendes Damas, Joanna D., Lewin, Harris A., Hastie, Alex R., Formenti, Giulio, Fedrigo, Olivier, Guhlin, Joseph, Harrop, Thomas W.R., Le Lec, Marissa F., Dearden, Peter K., Haggerty, Leanne, Martin, Fergal J., Kodali, Vamsi, Thibaud-Nissen, Françoise, Iorns, David, Knapp, Michael, Gemmell, Neil J., Robertson, Fiona, Moorhouse, Ron, Digby, Andrew, Eason, Daryl, Vercoe, Deidre, Howard, Jason, Jarvis, Erich D., Robertson, Bruce C., Dalén, Love
Publicado 2021

Ensembl 2016

por Yates, Andrew, Akanni, Wasiu, Amode, M. Ridwan, Barrell, Daniel, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Johnson, Nathan, Juettemann, Thomas, Keenan, Stephen, Lavidas, Ilias, Martin, Fergal J., Maurel, Thomas, McLaren, William, Murphy, Daniel N., Nag, Rishi, Nuhn, Michael, Parker, Anne, Patricio, Mateus, Pignatelli, Miguel, Rahtz, Matthew, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P., Zadissa, Amonida, Birney, Ewan, Harrow, Jennifer, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Spudich, Giulietta, Trevanion, Stephen J., Cunningham, Fiona, Aken, Bronwen L., Zerbino, Daniel R., Flicek, Paul
Publicado 2016

Ensembl 2015

por Cunningham, Fiona, Amode, M. Ridwan, Barrell, Daniel, Beal, Kathryn, Billis, Konstantinos, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Johnson, Nathan, Juettemann, Thomas, Kähäri, Andreas K., Keenan, Stephen, Martin, Fergal J., Maurel, Thomas, McLaren, William, Murphy, Daniel N., Nag, Rishi, Overduin, Bert, Parker, Anne, Patricio, Mateus, Perry, Emily, Pignatelli, Miguel, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P., Zadissa, Amonida, Aken, Bronwen L., Birney, Ewan, Harrow, Jennifer, Kinsella, Rhoda, Muffato, Matthieu, Ruffier, Magali, Searle, Stephen M.J., Spudich, Giulietta, Trevanion, Stephen J., Yates, Andy, Zerbino, Daniel R., Flicek, Paul
Publicado 2014

Ensembl 2017

por Aken, Bronwen L., Achuthan, Premanand, Akanni, Wasiu, Amode, M. Ridwan, Bernsdorff, Friederike, Bhai, Jyothish, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Juettemann, Thomas, Keenan, Stephen, Laird, Matthew R., Lavidas, Ilias, Maurel, Thomas, McLaren, William, Moore, Benjamin, Murphy, Daniel N., Nag, Rishi, Newman, Victoria, Nuhn, Michael, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Sheppard, Daniel, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Wilder, Steven P., Zadissa, Amonida, Kostadima, Myrto, Martin, Fergal J., Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M., Trevanion, Stephen J., Cunningham, Fiona, Yates, Andrew, Zerbino, Daniel R., Flicek, Paul
Publicado 2017

The swan genome and transcriptome, it is not all black and white

por Karawita, Anjana C., Cheng, Yuanyuan, Chew, Keng Yih, Challagulla, Arjun, Kraus, Robert, Mueller, Ralf C., Tong, Marcus Z. W., Hulme, Katina D., Bielefeldt-Ohmann, Helle, Steele, Lauren E., Wu, Melanie, Sng, Julian, Noye, Ellesandra, Bruxner, Timothy J., Au, Gough G., Lowther, Suzanne, Blommaert, Julie, Suh, Alexander, McCauley, Alexander J., Kaur, Parwinder, Dudchenko, Olga, Aiden, Erez, Fedrigo, Olivier, Formenti, Giulio, Mountcastle, Jacquelyn, Chow, William, Martin, Fergal J., Ogeh, Denye N., Thiaud-Nissen, Françoise, Howe, Kerstin, Tracey, Alan, Smith, Jacqueline, Kuo, Richard I., Renfree, Marilyn B., Kimura, Takashi, Sakoda, Yoshihiro, McDougall, Mathew, Spencer, Hamish G., Pyne, Michael, Tolf, Conny, Waldenström, Jonas, Jarvis, Erich D., Baker, Michelle L., Burt, David W., Short, Kirsty R.
Publicado 2023

A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats*

por de Jong, Tristan V, Pan, Yanchao, Rastas, Pasi, Munro, Daniel, Tutaj, Monika, Akil, Huda, Benner, Chris, Chen, Denghui, Chitre, Apurva S, Chow, William, Colonna, Vincenza, Dalgard, Clifton L, Demos, Wendy M, Doris, Peter A, Garrison, Erik, Geurts, Aron M, Gunturkun, Hakan M, Guryev, Victor, Hourlier, Thibaut, Howe, Kerstin, Huang, Jun, Kalbfleisch, Ted, Kim, Panjun, Li, Ling, Mahaffey, Spencer, Martin, Fergal J, Mohammadi, Pejman, Ozel, Ayse Bilge, Polesskaya, Oksana, Pravenec, Michal, Prins, Pjotr, Sebat, Jonathan, Smith, Jennifer R, Solberg Woods, Leah C, Tabakoff, Boris, Tracey, Alan, Uliano-Silva, Marcela, Villani, Flavia, Wang, Hongyang, Sharp, Burt M, Telese, Francesca, Jiang, Zhihua, Saba, Laura, Wang, Xusheng, Murphy, Terence D, Palmer, Abraham A, Kwitek, Anne E, Dwinell, Melinda R, Williams, Robert W, Li, Jun Z, Chen, Hao
Publicado 2023