FLAN: feature-wise latent additive neural models for biological applications

por Nguyen, An-Phi, Vasilaki, Stefania, Martínez, María Rodríguez
Publicado 2023

Network-based Biased Tree Ensembles (NetBiTE) for Drug Sensitivity Prediction and Drug Sensitivity Biomarker Identification in Cancer

por Oskooei, Ali, Manica, Matteo, Mathis, Roland, Martínez, María Rodríguez
Publicado 2019

DECODE: a computational pipeline to discover T cell receptor binding rules

por Papadopoulou, Iliana, Nguyen, An-Phi, Weber, Anna, Martínez, María Rodríguez
Publicado 2022

Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation

por Shalem, Ophir, Dahan, Orna, Levo, Michal, Martinez, Maria Rodriguez, Furman, Itay, Segal, Eran, Pilpel, Yitzhak
Publicado 2008

CellCycleTRACER accounts for cell cycle and volume in mass cytometry data

por Rapsomaniki, Maria Anna, Lun, Xiao-Kang, Woerner, Stefan, Laumanns, Marco, Bodenmiller, Bernd, Martínez, María Rodríguez
Publicado 2018

COSIFER: a Python package for the consensus inference of molecular interaction networks

por Manica, Matteo, Bunne, Charlotte, Mathis, Roland, Cadow, Joris, Ahsen, Mehmet Eren, Stolovitzky, Gustavo A, Martínez, María Rodríguez
Publicado 2020

High-throughput validation of ceRNA regulatory networks

por Chiu, Hua-Sheng, Martínez, María Rodríguez, Bansal, Mukesh, Subramanian, Aravind, Golub, Todd R., Yang, Xuerui, Sumazin, Pavel, Califano, Andrea
Publicado 2017

The number of titrated microRNA species dictates ceRNA regulation

por Chiu, Hua-Sheng, Martínez, María Rodríguez, . Komissarova, Elena V, Llobet-Navas, David, Bansal, Mukesh, Paull, Evan O, Silva, José, Yang, Xuerui, Sumazin, Pavel, Califano, Andrea
Publicado 2018

PCfun: a hybrid computational framework for systematic characterization of protein complex function

por Sharma, Varun S, Fossati, Andrea, Ciuffa, Rodolfo, Buljan, Marija, Williams, Evan G, Chen, Zhen, Shao, Wenguang, Pedrioli, Patrick G A, Purcell, Anthony W, Martínez, María Rodríguez, Song, Jiangning, Manica, Matteo, Aebersold, Ruedi, Li, Chen
Publicado 2022

Multiscale Modeling of Germinal Center Recapitulates the Temporal Transition From Memory B Cells to Plasma Cells Differentiation as Regulated by Antigen Affinity-Based Tfh Cell Hel...

por Merino Tejero, Elena, Lashgari, Danial, García-Valiente, Rodrigo, Gao, Xuefeng, Crauste, Fabien, Robert, Philippe A., Meyer-Hermann, Michael, Martínez, María Rodríguez, van Ham, S. Marieke, Guikema, Jeroen E. J., Hoefsloot, Huub, van Kampen, Antoine H. C.
Publicado 2021

Inferring clonal composition from multiple tumor biopsies

por Manica, Matteo, Kim, Hyunjae Ryan, Mathis, Roland, Chouvarine, Philippe, Rutishauser, Dorothea, De Vargas Roditi, Laura, Szalai, Bence, Wagner, Ulrich, Oehl, Kathrin, Saba, Karim, Pati, Arati, Saez-Rodriguez, Julio, Roy, Angshumoy, Parsons, Donald W., Wild, Peter J., Martínez, María Rodríguez, Sumazin, Pavel
Publicado 2020

Convergent network effects along the axis of gene expression during prostate cancer progression

por Charmpi, Konstantina, Guo, Tiannan, Zhong, Qing, Wagner, Ulrich, Sun, Rui, Toussaint, Nora C., Fritz, Christine E., Yuan, Chunhui, Chen, Hao, Rupp, Niels J., Christiansen, Ailsa, Rutishauser, Dorothea, Rüschoff, Jan H., Fankhauser, Christian, Saba, Karim, Poyet, Cedric, Hermanns, Thomas, Oehl, Kathrin, Moore, Ariane L., Beisel, Christian, Calzone, Laurence, Martignetti, Loredana, Zhang, Qiushi, Zhu, Yi, Martínez, María Rodríguez, Manica, Matteo, Haffner, Michael C., Aebersold, Ruedi, Wild, Peter J., Beyer, Andreas
Publicado 2020