ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data

por Baskin, Elizabeth, Farouni, Rick, Mathé, Ewy A
Publicado 2017

ALTRE: workflow for defining ALTered regulatory elements using chromatin accessibility data

por Baskin, Elizabeth, Farouni, Rick, Mathé, Ewy A
Publicado 2017

Clustering rare diseases within an ontology-enriched knowledge graph

por Sanjak, Jaleal, Zhu, Qian, Mathé, Ewy A.
Publicado 2023

Integrative Rare Disease Biomedical Profile based Network Supporting Drug Repurposing, a case study of Glioblastoma

por McGowan, Erin, Sanjak, Jaleal, Mathé, Ewy A., Zhu, Qian
Publicado 2023

Integrative rare disease biomedical profile based network supporting drug repurposing or repositioning, a case study of glioblastoma

por McGowan, Erin, Sanjak, Jaleal, Mathé, Ewy A., Zhu, Qian
Publicado 2023

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements

por Eicher, Tara, Chan, Jany, Luu, Han, Machiraju, Raghu, Mathé, Ewy A.
Publicado 2021

RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites

por Zhang, Bofei, Hu, Senyang, Baskin, Elizabeth, Patt, Andrew, Siddiqui, Jalal K., Mathé, Ewy A.
Publicado 2018

Exploring NCATS In-House Biomedical Data for Evidence-based Drug Repurposing

por Liu, Fang, Patt, Andrew, Chen, Chloe, Huang, Ruili, Xu, Yanji, Mathé, Ewy A., Zhu, Qian
Publicado 2023

Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources

por Eicher, Tara, Kinnebrew, Garrett, Patt, Andrew, Spencer, Kyle, Ying, Kevin, Ma, Qin, Machiraju, Raghu, Mathé, Ewy A.
Publicado 2020

Pre-existing autoimmunity is associated with increased severity of COVID-19: A retrospective cohort study using data from the National COVID Cohort Collaborative (N3C)

por Yadaw, Arjun S., Afzali, Behdad, Hotaling, Nathan, Sidky, Hythem, Pfaff, Emily R, Sahner, David K., Mathé, Ewy A.
Publicado 2023

Identification of transcription factor co-regulators that drive prostate cancer progression

por Siddappa, Manjunath, Wani, Sajad A., Long, Mark D., Leach, Damien A., Mathé, Ewy A., Bevan, Charlotte L., Campbell, Moray J.
Publicado 2020

Scientific evidence based rare disease research discovery with research funding data in knowledge graph

por Zhu, Qian, Nguyễn, Ðắc-Trung, Sheils, Timothy, Alyea, Gioconda, Sid, Eric, Xu, Yanji, Dickens, James, Mathé, Ewy A., Pariser, Anne
Publicado 2021

Dietary Energy Intake and Presence of Aberrant Crypt Foci Are Associated with Phospholipid, Purine, and Taurine Metabolite Abundances in C57BL/6N Mouse Colon

por Chatelaine, Haley A., Ramazani, Cynthia A., Spencer, Kyle, Olivo‐Marston, Susan, Bailey, Michael T., McElroy, Joseph, Hatzakis, Emmanuel, Mathé, Ewy A., Kopec, Rachel E.
Publicado 2022

IntLIM: integration using linear models of metabolomics and gene expression data

por Siddiqui, Jalal K., Baskin, Elizabeth, Liu, Mingrui, Cantemir-Stone, Carmen Z., Zhang, Bofei, Bonneville, Russell, McElroy, Joseph P., Coombes, Kevin R., Mathé, Ewy A.
Publicado 2018

MDM2-Dependent Rewiring of Metabolomic and Lipidomic Profiles in Dedifferentiated Liposarcoma Models

por Patt, Andrew, Demoret, Bryce, Stets, Colin, Bill, Kate-Lynn, Smith, Philip, Vijay, Anitha, Patterson, Andrew, Hays, John, Hoang, Mindy, Chen, James L., Mathé, Ewy A.
Publicado 2020

A Path to Real-World Evidence in Critical Care Using Open-Source Data Harmonization Tools

por Heavner, Smith F., Anderson, Wesley, Kashyap, Rahul, Dasher, Pamela, Mathé, Ewy A., Merson, Laura, Guerin, Philippe J., Weaver, Jeff, Robinson, Matthew, Schito, Marco, Kumar, Vishakha K., Nagy, Paul
Publicado 2023

A Pilot Cross-Sectional Study of Immunological and Microbiome Profiling Reveals Distinct Inflammatory Profiles for Smokers, Electronic Cigarette Users, and Never-Smokers

por Shields, Peter G., Ying, Kevin L., Brasky, Theodore M., Freudenheim, Jo L., Li, Zihai, McElroy, Joseph P., Reisinger, Sarah A., Song, Min-Ae, Weng, Daniel Y., Wewers, Mark D., Whiteman, Noah B., Yang, Yiping, Mathé, Ewy A.
Publicado 2023

The value of prospective metabolomic susceptibility endotypes: broad applicability for infectious diseases

por Chen, Yulu, Mendez, Kevin, Begum, Sofina, Dean, Emily, Chatelaine, Haley, Braisted, John, Fangal, Vrushali D., Cote, Margaret, Huang, Mengna, Chu, Su H., Stav, Meryl, Chen, Qingwen, Prince, Nicole, Kelly, Rachel, Christopher, Kenneth B., Diray-Arce, Joann, Mathé, Ewy A., Lasky-Su, Jessica
Publicado 2023

DEIA is essential to advance the goals of translational science: Perspectives from NCATS

por Hussain, Shadab F., Vogel, Amanda L., Faupel-Badger, Jessica M., Ho, Linda, Akacem, Lameese D., Balakrishnan, Krishna, Geiger, Rebekah, Gopal-Srivastava, Rashmi, Haynes, Brittany, Hodges, Marcus G., Isler, Tanetta, Mathé, Ewy A., Misquitta, Leonie, Sharma, Karlie R., Sid, Eric, Zigterman, Jamie L., Burgoon, Penny W.
Publicado 2022

A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research

por Zahoránszky-Kőhalmi, Gergely, Siramshetty, Vishal B., Kumar, Praveen, Gurumurthy, Manideep, Grillo, Busola, Mathew, Biju, Metaxatos, Dimitrios, Backus, Mark, Mierzwa, Tim, Simon, Reid, Grishagin, Ivan, Brovold, Laura, Mathé, Ewy A., Hall, Matthew D., Michael, Samuel G., Godfrey, Alexander G., Mestres, Jordi, Jensen, Lars J., Oprea, Tudor I.
Publicado 2020