Microbial co-habitation and lateral gene transfer: what transposases can tell us

por Hooper, Sean D, Mavromatis, Konstantinos, Kyrpides, Nikos C
Publicado 2009

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata

por Liolios, Konstantinos, Mavromatis, Konstantinos, Tavernarakis, Nektarios, Kyrpides, Nikos C.
Publicado 2008

Comparative Transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 Provide Insights into Mechanisms of Stress Acclimation

por Billis, Konstantinos, Billini, Maria, Tripp, H. James, Kyrpides, Nikos C., Mavromatis, Konstantinos
Publicado 2014

Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach

por Hooper, Sean D., Anderson, Iain J., Pati, Amrita, Dalevi, Daniel, Mavromatis, Konstantinos, Kyrpides, Nikos C.
Publicado 2009

Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System

por Mavromatis, Konstantinos, Chu, Ken, Ivanova, Natalia, Hooper, Sean D., Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2009

Estimating DNA coverage and abundance in metagenomes using a gamma approximation

por Hooper, Sean D., Dalevi, Daniel, Pati, Amrita, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2010

The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

por Mavromatis, Konstantinos, Ivanova, Natalia N., Chen, I-Min A., Szeto, Ernest, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2009

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

por Liolios, Konstantinos, Chen, I-Min A., Mavromatis, Konstantinos, Tavernarakis, Nektarios, Hugenholtz, Philip, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado 2010

Improving Microbial Genome Annotations in an Integrated Database Context

por Chen, I-Min A., Markowitz, Victor M., Chu, Ken, Anderson, Iain, Mavromatis, Konstantinos, Kyrpides, Nikos C., Ivanova, Natalia N.
Publicado 2013

Complete genome sequence of “Thioalkalivibrio sulfidophilus” HL-EbGr7

por Muyzer, Gerard, Sorokin, Dimitry Yu, Mavromatis, Konstantinos, Lapidus, Alla, Clum, Alicia, Ivanova, Natalia, Pati, Amrita, d'Haeseleer, Patrick, Woyke, Tanja, Kyrpides, Nikos C.
Publicado 2011

Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron

por DeAngelis, Kristen M., D’Haeseleer, Patrik, Chivian, Dylan, Simmons, Blake, Arkin, Adam P., Mavromatis, Konstantinos, Malfatti, Stephanie, Tringe, Susannah, Hazen, Terry C.
Publicado 2013

Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii

por Mavromatis, Konstantinos, Ivanova, Natalia, Anderson, Iain, Lykidis, Athanasios, Hooper, Sean D., Sun, Hui, Kunin, Victor, Lapidus, Alla, Hugenholtz, Philip, Patel, Bharat, Kyrpides, Nikos C.
Publicado 2009

Complete genome sequence of Thioalkalivibrio sp. K90mix

por Muyzer, Gerard, Sorokin, Dimitry Y., Mavromatis, Konstantinos, Lapidus, Alla, Foster, Brian, Sun, Hui, Ivanova, Natalia, Pati, Amrita, D'haeseleer, Patrik, Woyke, Tanja, Kyrpides, Nikos C.
Publicado 2011

High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6(T)), a diphenol degrader with genes involved in the catechol pathway

por Ntougias, Spyridon, Lapidus, Alla, Han, James, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Klenk, Hans-Peter, Woyke, Tanja, Fasseas, Constantinos, Kyrpides, Nikos C., Zervakis, Georgios I.
Publicado 2014

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

por Markowitz, Victor M., Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I-Min A., Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2008

The integrated microbial genomes system: an expanding comparative analysis resource

por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Grechkin, Yuri, Ratner, Anna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2010

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

por Mavromatis, Konstantinos, Land, Miriam L., Brettin, Thomas S., Quest, Daniel J., Copeland, Alex, Clum, Alicia, Goodwin, Lynne, Woyke, Tanja, Lapidus, Alla, Klenk, Hans Peter, Cottingham, Robert W., Kyrpides, Nikos C.
Publicado 2012

Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.

por Billings, Andrew F., Fortney, Julian L., Hazen, Terry C., Simmons, Blake, Davenport, Karen W., Goodwin, Lynne, Ivanova, Natalia, Kyrpides, Nikos C., Mavromatis, Konstantinos, Woyke, Tanja, DeAngelis, Kristen M.
Publicado 2015

The integrated microbial genomes (IMG) system

por Markowitz, Victor M., Korzeniewski, Frank, Palaniappan, Krishna, Szeto, Ernest, Werner, Greg, Padki, Anu, Zhao, Xueling, Dubchak, Inna, Hugenholtz, Philip, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia, Kyrpides, Nikos C.
Publicado 2006

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus

por Prestat, Emmanuel, David, Maude M., Hultman, Jenni, Taş, Neslihan, Lamendella, Regina, Dvornik, Jill, Mackelprang, Rachel, Myrold, David D., Jumpponen, Ari, Tringe, Susannah G., Holman, Elizabeth, Mavromatis, Konstantinos, Jansson, Janet K.
Publicado 2014