Performant web-based interactive visualization tool for spatially-resolved transcriptomics experiments

por Sriworarat, Chaichontat, Nguyen, Annie, Eagles, Nicholas J., Collado-Torres, Leonardo, Martinowich, Keri, Maynard, Kristen R., Hicks, Stephanie C.
Publicado 2023

Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single cell RNA-sequencing datasets

por Maden, Sean K., Kwon, Sang Ho, Huuki-Myers, Louise A., Collado-Torres, Leonardo, Hicks, Stephanie C., Maynard, Kristen R.
Publicado 2023

dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues

por Maynard, Kristen R, Tippani, Madhavi, Takahashi, Yoichiro, Phan, BaDoi N, Hyde, Thomas M, Jaffe, Andrew E, Martinowich, Keri
Publicado 2020

TrkB Signaling Influences Gene Expression in Cortistatin-Expressing Interneurons

por Maynard, Kristen R., Kardian, Alisha, Hill, Julia L., Mai, Yishan, Barry, Brianna, Hallock, Henry L., Jaffe, Andrew E., Martinowich, Keri
Publicado 2020

Data-driven identification of total RNA expression genes for estimation of RNA abundance in heterogeneous cell types highlighted in brain tissue

por Huuki-Myers, Louise A., Montgomery, Kelsey D., Kwon, Sang Ho, Page, Stephanie C., Hicks, Stephanie C., Maynard, Kristen R., Collado-Torres, Leonardo
Publicado 2023

spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data

por Pardo, Brenda, Spangler, Abby, Weber, Lukas M., Page, Stephanie C., Hicks, Stephanie C., Jaffe, Andrew E., Martinowich, Keri, Maynard, Kristen R., Collado-Torres, Leonardo
Publicado 2022

BDNF-TrkB signaling in oxytocin neurons contributes to maternal behavior

por Maynard, Kristen R, Hobbs, John W, Phan, BaDoi N, Gupta, Amolika, Rajpurohit, Sumita, Williams, Courtney, Rajpurohit, Anandita, Shin, Joo Heon, Jaffe, Andrew E, Martinowich, Keri
Publicado 2018

SUFI: an automated approach to spectral unmixing of fluorescent multiplex images captured in mouse and post-mortem human brain tissues

por Sadashivaiah, Vijay, Tippani, Madhavi, Page, Stephanie C., Kwon, Sang Ho, Bach, Svitlana V., Bharadwaj, Rahul A., Hyde, Thomas M., Kleinman, Joel E., Jaffe, Andrew E., Maynard, Kristen R.
Publicado 2023

Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex

por Maynard, Kristen R., Collado-Torres, Leonardo, Weber, Lukas M., Uytingco, Cedric, Barry, Brianna K., Williams, Stephen R., Catallini, Joseph L., Tran, Matthew N., Besich, Zachary, Tippani, Madhavi, Chew, Jennifer, Yin, Yifeng, Kleinman, Joel E., Hyde, Thomas M., Rao, Nikhil, Hicks, Stephanie C., Martinowich, Keri, Jaffe, Andrew E.
Publicado 2021

Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex

por Huuki-Myers, Louise, Spangler, Abby, Eagles, Nick, Montgomery, Kelsey D., Kwon, Sang Ho, Guo, Boyi, Grant-Peters, Melissa, Divecha, Heena R., Tippani, Madhavi, Sriworarat, Chaichontat, Nguyen, Annie B., Ravichandran, Prashanthi, Tran, Matthew N., Seyedian, Arta, Hyde, Thomas M., Kleinman, Joel E., Battle, Alexis, Page, Stephanie C., Ryten, Mina, Hicks, Stephanie C., Martinowich, Keri, Collado-Torres, Leonardo, Maynard, Kristen R.
Publicado 2023

Variation of Human Neural Stem Cells Generating Organizer States In Vitro before Committing to Cortical Excitatory or Inhibitory Neuronal Fates

por Micali, Nicola, Kim, Suel-Kee, Diaz-Bustamante, Marcelo, Stein-O’Brien, Genevieve, Seo, Seungmae, Shin, Joo-Heon, Rash, Brian G., Ma, Shaojie, Wang, Yanhong, Olivares, Nicolas A., Arellano, Jon I., Maynard, Kristen R., Fertig, Elana J., Cross, Alan J., Bürli, Roland W., Brandon, Nicholas J., Weinberger, Daniel R., Chenoweth, Joshua G., Hoeppner, Daniel J., Sestan, Nenad, Rakic, Pasko, Colantuoni, Carlo, McKay, Ronald D.
Publicado 2020