An interpretable bimodal neural network characterizes the sequence and preexisting chromatin predictors of induced transcription factor binding

por Srivastava, Divyanshi, Aydin, Begüm, Mazzoni, Esteban O., Mahony, Shaun
Publicado 2021

CTCF-mediated topological boundaries during development foster appropriate gene regulation

por Narendra, Varun, Bulajić, Milica, Dekker, Job, Mazzoni, Esteban O., Reinberg, Danny
Publicado 2016

Simple Method to Quantify Protein Abundances from 1000 Cells

por Vitrinel, Burcu, Iannitelli, Dylan E., Mazzoni, Esteban O., Christiaen, Lionel, Vogel, Christine
Publicado 2020

Lineage-based identification of cellular states and expression programs

por Hashimoto, Tatsunori, Jaakkola, Tommi, Sherwood, Richard, Mazzoni, Esteban O., Wichterle, Hynek, Gifford, David
Publicado 2012

Differential abilities to engage inaccessible chromatin diversify vertebrate Hox binding patterns

por Bulajić, Milica, Srivastava, Divyanshi, Dasen, Jeremy S., Wichterle, Hynek, Mahony, Shaun, Mazzoni, Esteban O.
Publicado 2020

Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis

por Mahony, Shaun, Mazzoni, Esteban O, McCuine, Scott, Young, Richard A, Wichterle, Hynek, Gifford, David K
Publicado 2011

PRC1 sustains the integrity of neural fate in the absence of PRC2 function

por Sawai, Ayana, Pfennig, Sarah, Bulajić, Milica, Miller, Alexander, Khodadadi-Jamayran, Alireza, Mazzoni, Esteban O, Dasen, Jeremy S
Publicado 2022

CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci

por Fu, Yi, Rocha, Pedro P., Luo, Vincent M., Raviram, Ramya, Deng, Yan, Mazzoni, Esteban O., Skok, Jane A.
Publicado 2016

Foxa2 and Pet1 Direct and Indirect Synergy Drive Serotonergic Neuronal Differentiation

por Aydin, Begüm, Sierk, Michael, Moreno-Estelles, Mireia, Tejavibulya, Link, Kumar, Nikathan, Flames, Nuria, Mahony, Shaun, Mazzoni, Esteban O.
Publicado 2022

Iroquois Complex Genes Induce Co-Expression of rhodopsins in Drosophila

por Mazzoni, Esteban O, Celik, Arzu, Wernet, Mathias F, Vasiliauskas, Daniel, Johnston, Robert J, Cook, Tiffany A, Pichaud, Franck, Desplan, Claude
Publicado 2008

Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes

por Aydin, Begüm, Kakumanu, Akshay, Rossillo, Mary, Moreno-Estellés, Mireia, Garipler, Görkem, Ringstad, Niels, Flames, Nuria, Mahony, Shaun, Mazzoni, Esteban O.
Publicado 2019

Feedback from Rhodopsin controls rhodopsin exclusion in Drosophila photoreceptors

por Vasiliauskas, Daniel, Mazzoni, Esteban O., Sprecher, Simon G., Brodetskiy, Konstantin, Johnston, Robert J., Lidder, Preetmoninder, Vogt, Nina, Celik, Arzu, Desplan, Claude
Publicado 2011

An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding

por Mahony, Shaun, Edwards, Matthew D., Mazzoni, Esteban O., Sherwood, Richard I., Kakumanu, Akshay, Morrison, Carolyn A., Wichterle, Hynek, Gifford, David K.
Publicado 2014

CRISPR and biochemical screens identify MAZ as a cofactor in CTCF-mediated insulation at Hox clusters

por Ortabozkoyun, Havva, Huang, Pin-Yao, Cho, Hyunwoo, Narendra, Varun, LeRoy, Gary, Gonzalez-Buendia, Edgar, Skok, Jane A., Tsirigos, Aristotelis, Mazzoni, Esteban O., Reinberg, Danny
Publicado 2022

Embryonic stem cell-based system for mapping developmental transcriptional programs

por Mazzoni, Esteban O., Mahony, Shaun, Iacovino, Michelina, Morrison, Carolyn A., Mountoufaris, George, Closser, Michael, Whyte, Warren A., Young, Richard A., Kyba, Michael, Gifford, David K., Wichterle, Hynek
Publicado 2011

Saltatory remodeling of Hox chromatin in response to rostro-caudal patterning signals

por Mazzoni, Esteban O., Mahony, Shaun, Peljto, Mirza, Patel, Tulsi, Thornton, Seraphim R., McCuine, Scott, Reeder, Christopher, Boyer, Laurie A., Young, Richard A., Gifford, David K., Wichterle, Hynek
Publicado 2013

The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by repressing pro-differentiation genes

por Garipler, Görkem, Lu, Congyi, Morrissey, Alexis, Lopez-Zepeda, Lorena S., Pei, Yingzhen, Vidal, Simon E., Fiore, Ana Paula Zen Petisco, Aydin, Begüm, Stadtfeld, Matthias, Ohler, Uwe, Mahony, Shaun, Sanjana, Neville E., Mazzoni, Esteban O.
Publicado 2022

ISSCR Education Committee syllabus and learning guide for enhancing stem cell literacy

por Perlin, Julie R., Anderson, William J., Bartfeld, Sina, Couturier, Anna, de Soysa, Yvanka, Hawley, R. Scott, Hu, Ping, Loh, Yuin-Han, Mandal, Lolitika, Master, Zubin, Muotri, Alysson R., Piddini, Eugenia, Polo, Jose M., Mazzoni, Esteban O.
Publicado 2023

RNA localization is a key determinant of neurite-enriched proteome

por Zappulo, Alessandra, van den Bruck, David, Ciolli Mattioli, Camilla, Franke, Vedran, Imami, Koshi, McShane, Erik, Moreno-Estelles, Mireia, Calviello, Lorenzo, Filipchyk, Andrei, Peguero-Sanchez, Esteban, Müller, Thomas, Woehler, Andrew, Birchmeier, Carmen, Merino, Enrique, Rajewsky, Nikolaus, Ohler, Uwe, Mazzoni, Esteban O., Selbach, Matthias, Akalin, Altuna, Chekulaeva, Marina
Publicado 2017