Fine-Scale Position Effects Shape the Distribution of Inversion Breakpoints in Drosophila melanogaster

por McBroome, Jakob, Liang, David, Corbett-Detig, Russell
Publicado 2020

Africanized bees extend their distribution in California

por Lin, Wei, McBroome, Jakob, Rehman, Mahwish, Johnson, Brian R.
Publicado 2018

Identifying SARS-CoV-2 regional introductions and transmission clusters in real time

por McBroome, Jakob, Martin, Jennifer, de Bernardi Schneider, Adriano, Turakhia, Yatish, Corbett-Detig, Russell
Publicado 2022

Pandemic-scale phylogenetics

por Ye, Cheng, Thornlow, Bryan, Kramer, Alexander, McBroome, Jakob, Hinrichs, Angie, Corbett-Detig, Russell, Turakhia, Yatish
Publicado 2021

A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees

por McBroome, Jakob, Thornlow, Bryan, Hinrichs, Angie S., De Maio, Nicola, Goldman, Nick, Haussler, David, Corbett-Detig, Russell, Turakhia, Yatish
Publicado 2021

A chromosome-scale genome assembly and karyotype of the ctenophore Hormiphora californensis

por Schultz, Darrin T, Francis, Warren R, McBroome, Jakob D, Christianson, Lynne M, Haddock, Steven H D, Green, Richard E
Publicado 2021

A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees

por McBroome, Jakob, Thornlow, Bryan, Hinrichs, Angie S, Kramer, Alexander, De Maio, Nicola, Goldman, Nick, Haussler, David, Corbett-Detig, Russell, Turakhia, Yatish
Publicado 2021

Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Approach...

por Thornlow, Bryan, Kramer, Alexander, Ye, Cheng, De Maio, Nicola, McBroome, Jakob, Hinrichs, Angie S., Lanfear, Robert, Turakhia, Yatish, Corbett-Detig, Russell
Publicado 2022

Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementati...

por Kramer, Alexander M, Thornlow, Bryan, Ye, Cheng, De Maio, Nicola, McBroome, Jakob, Hinrichs, Angie S, Lanfear, Robert, Turakhia, Yatish, Corbett-Detig, Russell
Publicado 2023

One fly–one genome: chromosome-scale genome assembly of a single outbred Drosophila melanogaster

por Adams, Matthew, McBroome, Jakob, Maurer, Nicholas, Pepper-Tunick, Evan, Saremi, Nedda F, Green, Richard E, Vollmers, Christopher, Corbett-Detig, Russell B
Publicado 2020

Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape

por Turakhia, Yatish, Thornlow, Bryan, Hinrichs, Angie, McBroome, Jakob, Ayala, Nicolas, Ye, Cheng, Smith, Kyle, De Maio, Nicola, Haussler, David, Lanfear, Robert, Corbett-Detig, Russell
Publicado 2022

A lung-specific mutational signature enables inference of viral and bacterial respiratory niche

por Ruis, Christopher, Peacock, Thomas P., Polo, Luis M., Masone, Diego, Alvarez, Maria Soledad, Hinrichs, Angie S., Turakhia, Yatish, Cheng, Ye, McBroome, Jakob, Corbett-Detig, Russell, Parkhill, Julian, Floto, R. Andres
Publicado 2023

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

por Thornlow, Bryan, Hinrichs, Angie S., Jain, Miten, Dhillon, Namrita, La, Scott, Kapp, Joshua D., Anigbogu, Ikenna, Cassatt-Johnstone, Molly, McBroome, Jakob, Haeussler, Maximilian, Turakhia, Yatish, Chang, Terren, Olsen, Hugh E, Sanford, Jeremy, Stone, Michael, Vaske, Olena, Bjork, Isabel, Akeson, Mark, Shapiro, Beth, Haussler, David, Kilpatrick, A. Marm, Corbett-Detig, Russell
Publicado 2021