Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets

por Lai, Yinglei, Zhang, Fanni, Nayak, Tapan K, Modarres, Reza, Lee, Norman H, McCaffrey, Timothy A
Publicado 2014

Detecting discordance enrichment among a series of two-sample genome-wide expression data sets

por Lai, Yinglei, Zhang, Fanni, Nayak, Tapan K., Modarres, Reza, Lee, Norman H., McCaffrey, Timothy A.
Publicado 2017

Biomarker discovery in attention deficit hyperactivity disorder: RNA sequencing of whole blood in discordant twin and case-controlled cohorts

por McCaffrey, Timothy A., St. Laurent, Georges, Shtokalo, Dmitry, Antonets, Denis, Vyatkin, Yuri, Jones, Daniel, Battison, Eleanor, Nigg, Joel T.
Publicado 2020

Acute appendicitis: transcript profiling of blood identifies promising biomarkers and potential underlying processes

por Chawla, Lakhmir S., Toma, Ian, Davison, Danielle, Vaziri, Khashayar, Lee, Juliet, Lucas, Raymond, Seneff, Michael G., Nyhan, Aoibhinn, McCaffrey, Timothy A.
Publicado 2016

Predictors of high on-aspirin platelet reactivity in elderly patients with coronary artery disease

por Zhang, JW, Liu, WW, McCaffrey, Timothy A, He, XQ, Liang, WY, Chen, XH, Feng, XR, Fu, Sidney W, Liu, ML
Publicado 2017

Diagnostic accuracy of novel mRNA blood biomarkers of infection to predict outcomes in emergency department patients with undifferentiated abdominal pain

por Meltzer, Andrew C., Wargowsky, Richard S., Moran, Seamus, Jordan, Tristan, Toma, Ian, Jepson, Tisha, Shu, Shiyu, Ma, Yan, McCaffrey, Timothy A.
Publicado 2023

BP1 Homeoprotein Enhances Metastatic Potential in ER-negative Breast Cancer

por Fu, Yebo, Lian, Yi, Kim, Kyung Soon, Zhang, Lei, Hindle, A. Katharine, Brody, Fred, Siegel, Robert S., McCaffrey, Timothy A., Fu, Sidney W.
Publicado 2010

Deep Sequencing Transcriptome Analysis of Murine Wound Healing: Effects of a Multicomponent, Multitarget Natural Product Therapy-Tr14

por St. Laurent, Georges, Seilheimer, Bernd, Tackett, Michael, Zhou, Jianhua, Shtokalo, Dmitry, Vyatkin, Yuri, Ri, Maxim, Toma, Ian, Jones, Dan, McCaffrey, Timothy A.
Publicado 2017

Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells

por St Laurent, Georges, Shtokalo, Dmitry, Tackett, Michael R, Yang, Zhaoqing, Eremina, Tatyana, Wahlestedt, Claes, Urcuqui-Inchima, Silvio, Seilheimer, Bernd, McCaffrey, Timothy A, Kapranov, Philipp
Publicado 2012

RNAseq analysis of treatment-dependent signaling changes during inflammation in a mouse cutaneous wound healing model

por St. Laurent, Georges, Toma, Ian, Seilheimer, Bernd, Cesnulevicius, Konstantin, Schultz, Myron, Tackett, Michael, Zhou, Jianhua, Ri, Maxim, Shtokalo, Dmitry, Antonets, Denis, Jepson, Tisha, McCaffrey, Timothy A.
Publicado 2021

Benchmark Evaluation of True Single Molecular Sequencing to Determine Cystic Fibrosis Airway Microbiome Diversity

por Hahn, Andrea, Bendall, Matthew L., Gibson, Keylie M., Chaney, Hollis, Sami, Iman, Perez, Geovanny F., Koumbourlis, Anastassios C., McCaffrey, Timothy A., Freishtat, Robert J., Crandall, Keith A.
Publicado 2018

VlincRNAs controlled by retroviral elements are a hallmark of pluripotency and cancer

por St Laurent, Georges, Shtokalo, Dmitry, Dong, Biao, Tackett, Michael R, Fan, Xiaoxuan, Lazorthes, Sandra, Nicolas, Estelle, Sang, Nianli, Triche, Timothy J, McCaffrey, Timothy A, Xiao, Weidong, Kapranov, Philipp
Publicado 2013

BP1, an Isoform of DLX4 Homeoprotein, Negatively Regulates BRCA1 in Sporadic Breast Cancer

por Kluk, Brian J., Fu, Yebo, Formolo, Trina A., Zhang, Lei, Hindle, Anne K., Man, Yan-gao, Siegel, Robert S., Berg, Patricia E., Deng, Chuxia, McCaffrey, Timothy A., Fu, Sidney W.
Publicado 2010

Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical Pathology

por Hilton, Sarah K., Castro-Nallar, Eduardo, Pérez-Losada, Marcos, Toma, Ian, McCaffrey, Timothy A., Hoffman, Eric P., Siegel, Marc O., Simon, Gary L., Johnson, W. Evan, Crandall, Keith A.
Publicado 2016

Cardiovascular Pharmacogenomics: Current Status and Future Directions—Report of a National Heart, Lung, and Blood Institute Working Group

por Musunuru, Kiran, Roden, Dan M., Boineau, Robin, Bristow, Michael R., McCaffrey, Timothy A., Newton-Cheh, Christopher, Paltoo, Dina N., Rosenberg, Yves, Wohlgemuth, Jay G., Zineh, Issam, Hasan, Ahmed A. K.
Publicado 2012

RNA Sequencing in COVID-19 patients identifies neutrophil activation biomarkers as a promising diagnostic platform for infections

por Wargodsky, Richard, Dela Cruz, Philip, LaFleur, John, Yamane, David, Kim, Justin Sungmin, Benjenk, Ivy, Heinz, Eric, Irondi, Obinna Ome, Farrar, Katherine, Toma, Ian, Jordan, Tristan, Goldman, Jennifer, McCaffrey, Timothy A.
Publicado 2022

Role of Deregulated microRNAs in Breast Cancer Progression Using FFPE Tissue

por Chen, Liang, Li, Youhuai, Fu, Yebo, Peng, Jin, Mo, Meng-Hsuan, Stamatakos, Michael, Teal, Christine B., Brem, Rachel F., Stojadinovic, Alexander, Grinkemeyer, Michael, McCaffrey, Timothy A., Man, Yan-gao, Fu, Sidney W.
Publicado 2013

RNAseq profiling of blood from patients with coronary artery disease: Signature of a T cell imbalance

por McCaffrey, Timothy A., Toma, Ian, Yang, Zhaoqing, Katz, Richard, Reiner, Jonathan, Mazhari, Ramesh, Shah, Palak, Falk, Zachary, Wargowsky, Richard, Goldman, Jennifer, Jones, Dan, Shtokalo, Dmitry, Antonets, Denis, Jepson, Tisha, Fetisova, Anastasia, Jaatinen, Kevin, Ree, Natalia, Ri, Maxim
Publicado 2023

Genomic Profiling Reveals the Potential Role of TCL1A and MDR1 Deficiency in Chemotherapy-Induced Cardiotoxicity

por McCaffrey, Timothy A., Tziros, Constantine, Lewis, Jannet, Katz, Richard, Siegel, Robert, Weglicki, William, Kramer, Jay, Mak, I. Tong, Toma, Ian, Chen, Liang, Benas, Elizabeth, Lowitt, Alexander, Rao, Shruti, Witkin, Linda, Lian, Yi, Lai, Yinglei, Yang, Zhaoqing, Fu, Sidney W.
Publicado 2013

Functional annotation of the vlinc class of non-coding RNAs using systems biology approach

por Laurent, Georges St., Vyatkin, Yuri, Antonets, Denis, Ri, Maxim, Qi, Yao, Saik, Olga, Shtokalo, Dmitry, de Hoon, Michiel J.L., Kawaji, Hideya, Itoh, Masayoshi, Lassmann, Timo, Arner, Erik, Forrest, Alistair R.R., Nicolas, Estelle, McCaffrey, Timothy A., Carninci, Piero, Hayashizaki, Yoshihide, Wahlestedt, Claes, Kapranov, Philipp
Publicado 2016