Single versus multiple imputation for genotypic data

por Fridley, Brooke L, McDonnell, Shannon K, Rabe, Kari G, Tang, Rui, Biernacka, Joanna M, Sinnwell, Jason P, Rider, David N, Goode, Ellen L
Publicado 2009

Comparison of tagging single-nucleotide polymorphism methods in association analyses

por Goode, Ellen L, Fridley, Brooke L, Sun, Zhifu, Atkinson, Elizabeth J, Nord, Alex S, McDonnell, Shannon K, Jarvik, Gail P, de Andrade, Mariza, Slager, Susan L
Publicado 2007

How well do whole exome sequencing results correlate with medical findings? A study of 89 Mayo Clinic Biobank samples

por Middha, Sumit, Lindor, Noralane M., McDonnell, Shannon K., Olson, Janet E., Johnson, Kiley J., Wieben, Eric D., Farrugia, Gianrico, Cerhan, James R., Thibodeau, Stephen N.
Publicado 2015

Linkage analysis using principal components of gene expression data

por Atkinson, Elizabeth J, Fridley, Brooke L, Goode, Ellen L, McDonnell, Shannon K, Liu-Mares, Wen, Rabe, Kari G, Sun, Zhifu, Slager, Susan L, de Andrade, Mariza
Publicado 2007

A microRNA Transcriptome-wide Association Study of Prostate Cancer Risk

por Larson, Nicholas B., McDonnell, Shannon K., Fogarty, Zachary, Liu, Yuanhang, French, Amy J., Tillmans, Lori S., Cheville, John C., Wang, Liang, Schaid, Daniel J., Thibodeau, Stephen N.
Publicado 2022

Assessment of genotype imputation methods

por Biernacka, Joanna M, Tang, Rui, Li, Jia, McDonnell, Shannon K, Rabe, Kari G, Sinnwell, Jason P, Rider, David N, de Andrade, Mariza, Goode, Ellen L, Fridley, Brooke L
Publicado 2009

Association of mitochondrial DNA copy number with self-rated health status

por Takahashi, Paul Y, Jenkins, Gregory D, Welkie, Benjamin P, McDonnell, Shannon K, evans, Jared M, Cerhan, James R, Olson, Janet E, Thibodeau, Stephen N, Cicek, Mine S, Ryu, Euijung
Publicado 2018

Genome-Wide Transcriptional Profiling Reveals MicroRNA-Correlated Genes and Biological Processes in Human Lymphoblastoid Cell Lines

por Wang, Liang, Oberg, Ann L., Asmann, Yan W., Sicotte, Hugues, McDonnell, Shannon K., Riska, Shaun M., Liu, Wanguo, Steer, Clifford J., Subramanian, Subbaya, Cunningham, Julie M., Cerhan, James R., Thibodeau, Stephen N.
Publicado 2009

Network-directed cis-mediator analysis of normal prostate tissue expression profiles reveals downstream regulatory associations of prostate cancer susceptibility loci

por Larson, Nicholas B., McDonnell, Shannon K., Fogarty, Zach, Larson, Melissa C., Cheville, John, Riska, Shaun, Baheti, Saurabh, Weber, Alexandra M., Nair, Asha A., Wang, Liang, O’Brien, Daniel, Davila, Jaime, Schaid, Daniel J., Thibodeau, Stephen N.
Publicado 2017

Identification of missing variants by combining multiple analytic pipelines

por Ren, Yingxue, Reddy, Joseph S., Pottier, Cyril, Sarangi, Vivekananda, Tian, Shulan, Sinnwell, Jason P., McDonnell, Shannon K., Biernacka, Joanna M., Carrasquillo, Minerva M., Ross, Owen A., Ertekin-Taner, Nilüfer, Rademakers, Rosa, Hudson, Matthew, Mainzer, Liudmila Sergeevna, Asmann, Yan W.
Publicado 2018

An expanded variant list and assembly annotation identifies multiple novel coding and noncoding genes for prostate cancer risk using a normal prostate tissue eQTL data set

por DeRycke, Melissa S., Larson, Melissa C., Nair, Asha A., McDonnell, Shannon K., French, Amy J., Tillmans, Lori S., Riska, Shaun M., Baheti, Saurabh, Fogarty, Zachary C., Larson, Nicholas B., O’Brien, Daniel R., Cheville, John C., Wang, Liang, Schaid, Daniel J., Thibodeau, Stephen N.
Publicado 2019

Germline miRNA DNA variants and the risk of colorectal cancer by subtype

por Lindor, Noralane M., Larson, Melissa C., DeRycke, Melissa S., McDonnell, Shannon K., Baheti, Saurabh, Fogarty, Zachary C., Win, Aung Ko, Potter, John D., Buchanan, Daniel D., Clendenning, Mark, Newcomb, Polly A., Casey, Graham, Gallinger, Steven, Le Marchand, Loïc, Hopper, John L., Jenkins, Mark A., Goode, Ellen L., Thibodeau, Stephen N.
Publicado 2016

Whole exome sequencing in 75 high-risk families with validation and replication in independent case-control studies identifies TANGO2, OR5H14, and CHAD as new prostate cancer susce...

por Karyadi, Danielle M., Geybels, Milan S., Karlins, Eric, Decker, Brennan, McIntosh, Laura, Hutchinson, Amy, Kolb, Suzanne, McDonnell, Shannon K., Hicks, Belynda, Middha, Sumit, FitzGerald, Liesel M., DeRycke, Melissa S., Yeager, Meredith, Schaid, Daniel J., Chanock, Stephen J., Thibodeau, Stephen N., Berndt, Sonja I., Stanford, Janet L., Ostrander, Elaine A.
Publicado 2016

Rare Germline Variants in ATM Predispose to Prostate Cancer: A PRACTICAL Consortium Study

por Karlsson, Questa, Brook, Mark N., Dadaev, Tokhir, Wakerell, Sarah, Saunders, Edward J., Muir, Kenneth, Neal, David E., Giles, Graham G., MacInnis, Robert J., Thibodeau, Stephen N., McDonnell, Shannon K., Cannon-Albright, Lisa, Teixeira, Manuel R., Paulo, Paula, Cardoso, Marta, Huff, Chad, Li, Donghui, Yao, Yu, Scheet, Paul, Permuth, Jennifer B., Stanford, Janet L., Dai, James Y., Ostrander, Elaine A., Cussenot, Olivier, Cancel-Tassin, Géraldine, Hoegel, Josef, Herkommer, Kathleen, Schleutker, Johanna, Tammela, Teuvo L.J., Rathinakannan, Venkat, Sipeky, Csilla, Wiklund, Fredrik, Grönberg, Henrik, Aly, Markus, Isaacs, William B., Dickinson, Jo L., FitzGerald, Liesel M., Chua, Melvin L.K., Nguyen-Dumont, Tu, Schaid, Daniel J., Southey, Melissa C., Eeles, Rosalind A., Kote-Jarai, Zsofia
Publicado 2021

HOXB13 is a susceptibility gene for prostate cancer: results from the International Consortium for Prostate Cancer Genetics (ICPCG)

por Xu, Jianfeng, Lange, Ethan M., Lu, Lingyi, Zheng, Siqun L., Wang, Zhong, Thibodeau, Stephen N., Cannon-Albright, Lisa A., Teerlink, Craig C., Camp, Nicola J., Johnson, Anna M., Zuhlke, Kimberly A., Stanford, Janet L., Ostrander, Elaine A., Wiley, Kathleen E., Isaacs, Sarah D., Walsh, Patrick C., Maier, Christiane, Luedeke, Manuel, Vogel, Walther, Schleutker, Johanna, Wahlfors, Tiina, Tammela, Teuvo, Schaid, Daniel, McDonnell, Shannon K., DeRycke, Melissa S., Cancel-Tassin, Geraldine, Cussenot, Olivier, Wiklund, Fredrik, Grönberg, Henrik, Eeles, Ros, Easton, Doug, Kote-Jarai, Zsofia, Whittemore, Alice S., Hsieh, Chih-Lin, Giles, Graham G., Hopper, John L., Severi, Gianluca, Catalona, William J., Mandal, Diptasri, Ledet, Elisa, Foulkes, William D., Hamel, Nancy, Mahle, Lovise, Moller, Pal, Powell, Isaac, Bailey-Wilson, Joan E., Carpten, John D., Seminara, Daniela, Cooney, Kathleen A., Isaacs, William B.
Publicado 2012

Analysis of Xq27-28 linkage in the international consortium for prostate cancer genetics (ICPCG) families

por Bailey-Wilson, Joan E, Childs, Erica J, Cropp, Cheryl D, Schaid, Daniel J, Xu, Jianfeng, Camp, Nicola J, Cannon-Albright, Lisa A, Farnham, James M, George, Asha, Powell, Isaac, Carpten, John D, Giles, Graham G, Hopper, John L, Severi, Gianluca, English, Dallas R, Foulkes, William D, Mæhle, Lovise, Møller, Pål, Eeles, Rosalind, Easton, Douglas, Guy, Michelle, Edwards, Steve, Badzioch, Michael D, Whittemore, Alice S, Oakley-Girvan, Ingrid, Hsieh, Chih-Lin, Dimitrov, Latchezar, Stanford, Janet L, Karyadi, Danielle M, Deutsch, Kerry, McIntosh, Laura, Ostrander, Elaine A, Wiley, Kathleen E, Isaacs, Sarah D, Walsh, Patrick C, Thibodeau, Stephen N, McDonnell, Shannon K, Hebbring, Scott, Lange, Ethan M, Cooney, Kathleen A, Tammela, Teuvo LJ, Schleutker, Johanna, Maier, Christiane, Bochum, Sylvia, Hoegel, Josef, Grönberg, Henrik, Wiklund, Fredrik, Emanuelsson, Monica, Cancel-Tassin, Geraldine, Valeri, Antoine, Cussenot, Olivier, Isaacs, William B
Publicado 2012

The effect of sample size on polygenic hazard models for prostate cancer

por Karunamuni, Roshan A., Huynh-Le, Minh-Phuong, Fan, Chun C., Eeles, Rosalind A., Easton, Douglas F., Kote-Jarai, ZSofia, Amin Al Olama, Ali, Benlloch Garcia, Sara, Muir, Kenneth, Gronberg, Henrik, Wiklund, Fredrik, Aly, Markus, Schleutker, Johanna, Sipeky, Csilla, Tammela, Teuvo L. J., Nordestgaard, Børge G., Key, Tim J., Travis, Ruth C., Neal, David E., Donovan, Jenny L., Hamdy, Freddie C., Pharoah, Paul, Pashayan, Nora, Khaw, Kay-Tee, Thibodeau, Stephen N., McDonnell, Shannon K., Schaid, Daniel J., Maier, Christiane, Vogel, Walther, Luedeke, Manuel, Herkommer, Kathleen, Kibel, Adam S., Cybulski, Cezary, Wokolorczyk, Dominika, Kluzniak, Wojciech, Cannon-Albright, Lisa, Brenner, Hermann, Schöttker, Ben, Holleczek, Bernd, Park, Jong Y., Sellers, Thomas A., Lin, Hui-Yi, Slavov, Chavdar, Kaneva, Radka, Mitev, Vanio, Batra, Jyotsna, Clements, Judith A., Spurdle, Amanda, Teixeira, Manuel R., Paulo, Paula, Maia, Sofia, Pandha, Hardev, Michael, Agnieszka, Mills, Ian G., Andreassen, Ole A., Dale, Anders M., Seibert, Tyler M.
Publicado 2020

Atlas of prostate cancer heritability in European and African-American men pinpoints tissue-specific regulation

por Gusev, Alexander, Shi, Huwenbo, Kichaev, Gleb, Pomerantz, Mark, Li, Fugen, Long, Henry W., Ingles, Sue A., Kittles, Rick A., Strom, Sara S., Rybicki, Benjamin A., Nemesure, Barbara, Isaacs, William B., Zheng, Wei, Pettaway, Curtis A., Yeboah, Edward D., Tettey, Yao, Biritwum, Richard B., Adjei, Andrew A., Tay, Evelyn, Truelove, Ann, Niwa, Shelley, Chokkalingam, Anand P., John, Esther M., Murphy, Adam B., Signorello, Lisa B., Carpten, John, Leske, M. Cristina, Wu, Suh-Yuh, Hennis, Anslem J. M., Neslund-Dudas, Christine, Hsing, Ann W., Chu, Lisa, Goodman, Phyllis J., Klein, Eric A., Witte, John S., Casey, Graham, Kaggwa, Sam, Cook, Michael B., Stram, Daniel O., Blot, William J., Eeles, Rosalind A., Easton, Douglas, Kote-Jarai, ZSofia, Al Olama, Ali Amin, Benlloch, Sara, Muir, Kenneth, Giles, Graham G., Southey, Melissa C., Fitzgerald, Liesel M., Gronberg, Henrik, Wiklund, Fredrik, Aly, Markus, Henderson, Brian E., Schleutker, Johanna, Wahlfors, Tiina, Tammela, Teuvo L. J., Nordestgaard, Børge G., Key, Tim J., Travis, Ruth C., Neal, David E., Donovan, Jenny L., Hamdy, Freddie C., Pharoah, Paul, Pashayan, Nora, Khaw, Kay-Tee, Stanford, Janet L., Thibodeau, Stephen N., McDonnell, Shannon K., Schaid, Daniel J., Maier, Christiane, Vogel, Walther, Luedeke, Manuel, Herkommer, Kathleen, Kibel, Adam S., Cybulski, Cezary, Wokolorczyk, Dominika, Kluzniak, Wojciech, Cannon-Albright, Lisa, Teerlink, Craig, Brenner, Hermann, Dieffenbach, Aida K., Arndt, Volker, Park, Jong Y., Sellers, Thomas A., Lin, Hui-Yi, Slavov, Chavdar, Kaneva, Radka, Mitev, Vanio, Batra, Jyotsna, Spurdle, Amanda, Clements, Judith A., Teixeira, Manuel R., Pandha, Hardev, Michael, Agnieszka, Paulo, Paula, Maia, Sofia, Kierzek, Andrzej, Conti, David V., Albanes, Demetrius, Berg, Christine, Berndt, Sonja I., Campa, Daniele, Crawford, E. David, Diver, W. Ryan, Gapstur, Susan M., Gaziano, J. Michael, Giovannucci, Edward, Hoover, Robert, Hunter, David J., Johansson, Mattias, Kraft, Peter, Le Marchand, Loic, Lindström, Sara, Navarro, Carmen, Overvad, Kim, Riboli, Elio, Siddiq, Afshan, Stevens, Victoria L., Trichopoulos, Dimitrios, Vineis, Paolo, Yeager, Meredith, Trynka, Gosia, Raychaudhuri, Soumya, Schumacher, Frederick R., Price, Alkes L., Freedman, Matthew L., Haiman, Christopher A., Pasaniuc, Bogdan
Publicado 2016

A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer

por Al Olama, Ali Amin, Kote-Jarai, Zsofia, Berndt, Sonja I., Conti, David V., Schumacher, Fredrick, Han, Ying, Benlloch, Sara, Hazelett, Dennis J., Wang, Zhaoming, Saunders, Ed, Leongamornlert, Daniel, Lindstrom, Sara, Jugurnauth-Little, Sara, Dadaev, Tokhir, Tymrakiewicz, Malgorzata, Stram, Daniel O., Rand, Kristin, Wan, Peggy, Stram, Alex, Sheng, Xin, Pooler, Loreall C., Park, Karen, Xia, Lucy, Tyrer, Jonathan, Kolonel, Laurence N., Le Marchand, Loic, Hoover, Robert N., Machiela, Mitchell J., Yeager, Merideth, Burdette, Laurie, Chung, Charles C., Hutchinson, Amy, Yu, Kai, Goh, Chee, Ahmed, Mahbubl, Govindasami, Koveela, Guy, Michelle, Tammela, Teuvo L.J., Auvinen, Anssi, Wahlfors, Tiina, Schleutker, Johanna, Visakorpi, Tapio, Leinonen, Katri A., Xu, Jianfeng, Aly, Markus, Donovan, Jenny, Travis, Ruth C., Key, Tim J., Siddiq, Afshan, Canzian, Federico, Khaw, Kay-Tee, Takahashi, Atsushi, Kubo, Michiaki, Pharoah, Paul, Pashayan, Nora, Weischer, Maren, Nordestgaard, Borge G., Nielsen, Sune F., Klarskov, Peter, Røder, Martin Andreas, Iversen, Peter, Thibodeau, Stephen N., McDonnell, Shannon K, Schaid, Daniel J, Stanford, Janet L., Kolb, Suzanne, Holt, Sarah, Knudsen, Beatrice, Coll, Antonio Hurtado, Gapstur, Susan M., Diver, W. Ryan, Stevens, Victoria L., Maier, Christiane, Luedeke, Manuel, Herkommer, Kathleen, Rinckleb, Antje E., Strom, Sara S., Pettaway, Curtis, Yeboah, Edward D., Tettey, Yao, Biritwum, Richard B., Adjei, Andrew A., Tay, Evelyn, Truelove, Ann, Niwa, Shelley, Chokkalingam, Anand P., Cannon-Albright, Lisa, Cybulski, Cezary, Wokołorczyk, Dominika, Kluźniak, Wojciech, Park, Jong, Sellers, Thomas, Lin, Hui-Yi, Isaacs, William B., Partin, Alan W., Brenner, Hermann, Dieffenbach, Aida Karina, Stegmaier, Christa, Chen, Constance, Giovannucci, Edward L., Ma, Jing, Stampfer, Meir, Penney, Kathryn L., Mucci, Lorelei, John, Esther M., Ingles, Sue A., Kittles, Rick A., Murphy, Adam B., Pandha, Hardev, Michael, Agnieszka, Kierzek, Andrzej M., Blot, William, Signorello, Lisa B., Zheng, Wei, Albanes, Demetrius, Virtamo, Jarmo, Weinstein, Stephanie, Nemesure, Barbara, Carpten, John, Leske, Cristina, Wu, Suh-Yuh, Hennis, Anselm, Kibel, Adam S., Rybicki, Benjamin A., Neslund-Dudas, Christine, Hsing, Ann W., Chu, Lisa, Goodman, Phyllis J., Klein, Eric A, Zheng, S. Lilly, Batra, Jyotsna, Clements, Judith, Spurdle, Amanda, Teixeira, Manuel R., Paulo, Paula, Maia, Sofia, Slavov, Chavdar, Kaneva, Radka, Mitev, Vanio, Witte, John S., Casey, Graham, Gillanders, Elizabeth M., Seminara, Daniella, Riboli, Elio, Hamdy, Freddie C., Coetzee, Gerhard A., Li, Qiyuan, Freedman, Matthew L., Hunter, David J., Muir, Kenneth, Gronberg, Henrik, Neal, David E., Southey, Melissa, Giles, Graham G., Severi, Gianluca, Cook, Michael B., Nakagawa, Hidewaki, Wiklund, Fredrik, Kraft, Peter, Chanock, Stephen J., Henderson, Brian E., Easton, Douglas F., Eeles, Rosalind A., Haiman, Christopher A.
Publicado 2014

Fine-mapping of prostate cancer susceptibility loci in a large meta-analysis identifies candidate causal variants

por Dadaev, Tokhir, Saunders, Edward J., Newcombe, Paul J., Anokian, Ezequiel, Leongamornlert, Daniel A., Brook, Mark N., Cieza-Borrella, Clara, Mijuskovic, Martina, Wakerell, Sarah, Olama, Ali Amin Al, Schumacher, Fredrick R., Berndt, Sonja I., Benlloch, Sara, Ahmed, Mahbubl, Goh, Chee, Sheng, Xin, Zhang, Zhuo, Muir, Kenneth, Govindasami, Koveela, Lophatananon, Artitaya, Stevens, Victoria L., Gapstur, Susan M., Carter, Brian D., Tangen, Catherine M., Goodman, Phyllis, Thompson, Ian M., Batra, Jyotsna, Chambers, Suzanne, Moya, Leire, Clements, Judith, Horvath, Lisa, Tilley, Wayne, Risbridger, Gail, Gronberg, Henrik, Aly, Markus, Nordström, Tobias, Pharoah, Paul, Pashayan, Nora, Schleutker, Johanna, Tammela, Teuvo L. J., Sipeky, Csilla, Auvinen, Anssi, Albanes, Demetrius, Weinstein, Stephanie, Wolk, Alicja, Hakansson, Niclas, West, Catharine, Dunning, Alison M., Burnet, Neil, Mucci, Lorelei, Giovannucci, Edward, Andriole, Gerald, Cussenot, Olivier, Cancel-Tassin, Géraldine, Koutros, Stella, Freeman, Laura E. Beane, Sorensen, Karina Dalsgaard, Orntoft, Torben Falck, Borre, Michael, Maehle, Lovise, Grindedal, Eli Marie, Neal, David E., Donovan, Jenny L., Hamdy, Freddie C., Martin, Richard M., Travis, Ruth C., Key, Tim J., Hamilton, Robert J., Fleshner, Neil E., Finelli, Antonio, Ingles, Sue Ann, Stern, Mariana C., Rosenstein, Barry, Kerns, Sarah, Ostrer, Harry, Lu, Yong-Jie, Zhang, Hong-Wei, Feng, Ninghan, Mao, Xueying, Guo, Xin, Wang, Guomin, Sun, Zan, Giles, Graham G., Southey, Melissa C., MacInnis, Robert J., FitzGerald, Liesel M., Kibel, Adam S., Drake, Bettina F., Vega, Ana, Gómez-Caamaño, Antonio, Fachal, Laura, Szulkin, Robert, Eklund, Martin, Kogevinas, Manolis, Llorca, Javier, Castaño-Vinyals, Gemma, Penney, Kathryn L., Stampfer, Meir, Park, Jong Y., Sellers, Thomas A., Lin, Hui-Yi, Stanford, Janet L., Cybulski, Cezary, Wokolorczyk, Dominika, Lubinski, Jan, Ostrander, Elaine A., Geybels, Milan S., Nordestgaard, Børge G., Nielsen, Sune F., Weisher, Maren, Bisbjerg, Rasmus, Røder, Martin Andreas, Iversen, Peter, Brenner, Hermann, Cuk, Katarina, Holleczek, Bernd, Maier, Christiane, Luedeke, Manuel, Schnoeller, Thomas, Kim, Jeri, Logothetis, Christopher J., John, Esther M., Teixeira, Manuel R., Paulo, Paula, Cardoso, Marta, Neuhausen, Susan L., Steele, Linda, Ding, Yuan Chun, De Ruyck, Kim, De Meerleer, Gert, Ost, Piet, Razack, Azad, Lim, Jasmine, Teo, Soo-Hwang, Lin, Daniel W., Newcomb, Lisa F., Lessel, Davor, Gamulin, Marija, Kulis, Tomislav, Kaneva, Radka, Usmani, Nawaid, Slavov, Chavdar, Mitev, Vanio, Parliament, Matthew, Singhal, Sandeep, Claessens, Frank, Joniau, Steven, Van den Broeck, Thomas, Larkin, Samantha, Townsend, Paul A., Aukim-Hastie, Claire, Gago-Dominguez, Manuela, Castelao, Jose Esteban, Martinez, Maria Elena, Roobol, Monique J., Jenster, Guido, van Schaik, Ron H. N., Menegaux, Florence, Truong, Thérèse, Koudou, Yves Akoli, Xu, Jianfeng, Khaw, Kay-Tee, Cannon-Albright, Lisa, Pandha, Hardev, Michael, Agnieszka, Kierzek, Andrzej, Thibodeau, Stephen N., McDonnell, Shannon K., Schaid, Daniel J., Lindstrom, Sara, Turman, Constance, Ma, Jing, Hunter, David J., Riboli, Elio, Siddiq, Afshan, Canzian, Federico, Kolonel, Laurence N., Le Marchand, Loic, Hoover, Robert N., Machiela, Mitchell J., Kraft, Peter, Freedman, Matthew, Wiklund, Fredrik, Chanock, Stephen, Henderson, Brian E., Easton, Douglas F., Haiman, Christopher A., Eeles, Rosalind A., Conti, David V., Kote-Jarai, Zsofia
Publicado 2018