A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition

por McFaline-Figueroa, José L., Hill, Andrew J., Qiu, Xiaojie, Jackson, Dana, Shendure, Jay, Trapnell, Cole
Publicado 2019

Nuclear oligo hashing improves differential analysis of single-cell RNA-seq

por Kim, Hyeon-Jin, Booth, Greg, Saunders, Lauren, Srivatsan, Sanjay, McFaline-Figueroa, José L., Trapnell, Cole
Publicado 2022

High-Capacity Sample Multiplexing for Single Cell Chromatin Accessibility Profiling

por Booth, Gregory T., Daza, Riza M., Srivatsan, Sanjay R., McFaline-Figueroa, José L., Gladden, Rula Green, Furlan, Scott N., Shendure, Jay, Trapnell, Cole
Publicado 2023

On the design of CRISPR-based single cell molecular screens

por Hill, Andrew J., McFaline-Figueroa, José L., Starita, Lea M., Gasperini, Molly J., Matreyek, Kenneth A., Packer, Jonathan, Jackson, Dana, Shendure, Jay, Trapnell, Cole
Publicado 2018

High-capacity sample multiplexing for single cell chromatin accessibility profiling

por Booth, Gregory T., Daza, Riza M., Srivatsan, Sanjay R., McFaline-Figueroa, José L., Gladden, Rula Green, Mullen, Andrew C., Furlan, Scott N., Shendure, Jay, Trapnell, Cole
Publicado 2023

Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana

por Jean-Baptiste, Ken, McFaline-Figueroa, José L., Alexandre, Cristina M., Dorrity, Michael W., Saunders, Lauren, Bubb, Kerry L., Trapnell, Cole, Fields, Stanley, Queitsch, Christine, Cuperus, Josh T.
Publicado 2019

Targeting TWIST1 through loss of function inhibits tumorigenicity of human glioblastoma

por Mikheev, Andrei M., Mikheeva, Svetlana A., Severs, Liza J., Funk, Cory C., Huang, Lei, McFaline‐Figueroa, José L., Schwensen, Jeanette, Trapnell, Cole, Price, Nathan D., Wong, Stephen, Rostomily, Robert C.
Publicado 2018

Thyroid hormone regulates distinct paths to maturation in pigment cell lineages

por Saunders, Lauren M, Mishra, Abhishek K, Aman, Andrew J, Lewis, Victor M, Toomey, Matthew B, Packer, Jonathan S, Qiu, Xiaojie, McFaline-Figueroa, Jose L, Corbo, Joseph C, Trapnell, Cole, Parichy, David M
Publicado 2019

Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy

por McFaline-Figueroa, José L., Srivatsan, Sanjay, Hill, Andrew J., Gasperini, Molly, Jackson, Dana L., Saunders, Lauren, Domcke, Silvia, Regalado, Samuel G., Lazarchuck, Paul, Alvarez, Sarai, Monnat, Raymond J., Shendure, Jay, Trapnell, Cole
Publicado 2023

Neural G0: a quiescent‐like state found in neuroepithelial‐derived cells and glioma

por O’Connor, Samantha A, Feldman, Heather M, Arora, Sonali, Hoellerbauer, Pia, Toledo, Chad M, Corrin, Philip, Carter, Lucas, Kufeld, Megan, Bolouri, Hamid, Basom, Ryan, Delrow, Jeffrey, McFaline‐Figueroa, José L, Trapnell, Cole, Pollard, Steven M, Patel, Anoop, Paddison, Patrick J, Plaisier, Christopher L
Publicado 2021

Predicting cellular responses to complex perturbations in high‐throughput screens

por Lotfollahi, Mohammad, Klimovskaia Susmelj, Anna, De Donno, Carlo, Hetzel, Leon, Ji, Yuge, Ibarra, Ignacio L, Srivatsan, Sanjay R, Naghipourfar, Mohsen, Daza, Riza M, Martin, Beth, Shendure, Jay, McFaline‐Figueroa, Jose L, Boyeau, Pierre, Wolf, F Alexander, Yakubova, Nafissa, Günnemann, Stephan, Trapnell, Cole, Lopez‐Paz, David, Theis, Fabian J
Publicado 2023