Matching isotopic distributions from metabolically labeled samples

por McIlwain, Sean, Page, David, Huttlin, Edward L., Sussman, Michael R.
Publicado 2008

Ranking Antibody Binding Epitopes and Proteins Across Samples from Whole Proteome Tiled Linear Peptides

por McIlwain, Sean J., Hoefges, Anna, Erbe, Amy K., Sondel, Paul M., Ong, Irene M.
Publicado 2023

Estimating relative abundances of proteins from shotgun proteomics data

por McIlwain, Sean, Mathews, Michael, Bereman, Michael S, Rubel, Edwin W, MacCoss, Michael J, Noble, William Stafford
Publicado 2012

Gut microbiome populations are associated with structure-specific changes in white matter architecture

por Ong, Irene M., Gonzalez, Jose G., McIlwain, Sean J., Sawin, Emily A., Schoen, Andrew J., Adluru, Nagesh, Alexander, Andrew L., Yu, John-Paul J.
Publicado 2018

Mechanism of imidazolium ionic liquids toxicity in Saccharomyces cerevisiae and rational engineering of a tolerant, xylose-fermenting strain

por Dickinson, Quinn, Bottoms, Scott, Hinchman, Li, McIlwain, Sean, Li, Sheena, Myers, Chad L., Boone, Charles, Coon, Joshua J., Hebert, Alexander, Sato, Trey K., Landick, Robert, Piotrowski, Jeff S.
Publicado 2016

Inflammatory CD4/CD8 double-positive human T cells arise from reactive CD8 T cells and are sufficient to mediate GVHD pathology

por Hess, Nicholas J., Turicek, David P., Riendeau, Jeremiah, McIlwain, Sean J., Contreras Guzman, Emmanuel, Nadiminti, Kalyan, Hudson, Amy, Callander, Natalie S., Skala, Melissa C., Gumperz, Jenny E., Hematti, Peiman, Capitini, Christian M.
Publicado 2023

Crux: Rapid Open Source Protein Tandem Mass Spectrometry Analysis

por McIlwain, Sean, Tamura, Kaipo, Kertesz-Farkas, Attila, Grant, Charles E., Diament, Benjamin, Frewen, Barbara, Howbert, J. Jeffry, Hoopmann, Michael R., Käll, Lukas, Eng, Jimmy K., MacCoss, Michael J., Noble, William Stafford
Publicado 2014

The landscape of antibody binding in SARS-CoV-2 infection

por Heffron, Anna S., McIlwain, Sean J., Amjadi, Maya F., Baker, David A., Khullar, Saniya, Armbrust, Tammy, Halfmann, Peter J., Kawaoka, Yoshihiro, Sethi, Ajay K., Palmenberg, Ann C., Shelef, Miriam A., O’Connor, David H., Ong, Irene M.
Publicado 2021

Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research

por McIlwain, Sean J., Peris, David, Sardi, Maria, Moskvin, Oleg V., Zhan, Fujie, Myers, Kevin S., Riley, Nicholas M., Buzzell, Alyssa, Parreiras, Lucas S., Ong, Irene M., Landick, Robert, Coon, Joshua J., Gasch, Audrey P., Sato, Trey K., Hittinger, Chris Todd
Publicado 2016

High sensitivity top–down proteomics captures single muscle cell heterogeneity in large proteoforms

por Melby, Jake A., Brown, Kyle A., Gregorich, Zachery R., Roberts, David S., Chapman, Emily A., Ehlers, Lauren E., Gao, Zhan, Larson, Eli J., Jin, Yutong, Lopez, Justin R., Hartung, Jared, Zhu, Yanlong, McIlwain, Sean J., Wang, Daojing, Guo, Wei, Diffee, Gary M., Ge, Ying
Publicado 2023

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032

por Yang, Shihui, Vera, Jessica M., Grass, Jeff, Savvakis, Giannis, Moskvin, Oleg V., Yang, Yongfu, McIlwain, Sean J., Lyu, Yucai, Zinonos, Irene, Hebert, Alexander S., Coon, Joshua J., Bates, Donna M., Sato, Trey K., Brown, Steven D., Himmel, Michael E., Zhang, Min, Landick, Robert, Pappas, Katherine M., Zhang, Yaoping
Publicado 2018

MASH Native: a unified solution for native top-down proteomics data processing

por Larson, Eli J, Pergande, Melissa R, Moss, Michelle E, Rossler, Kalina J, Wenger, R Kent, Krichel, Boris, Josyer, Harini, Melby, Jake A, Roberts, David S, Pike, Kyndalanne, Shi, Zhuoxin, Chan, Hsin-Ju, Knight, Bridget, Rogers, Holden T, Brown, Kyle A, Ong, Irene M, Jeong, Kyowon, Marty, Michael T, McIlwain, Sean J, Ge, Ying
Publicado 2023

Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxificatio...

por Keating, David H., Zhang, Yaoping, Ong, Irene M., McIlwain, Sean, Morales, Eduardo H., Grass, Jeffrey A., Tremaine, Mary, Bothfeld, William, Higbee, Alan, Ulbrich, Arne, Balloon, Allison J., Westphall, Michael S., Aldrich, Josh, Lipton, Mary S., Kim, Joonhoon, Moskvin, Oleg V., Bukhman, Yury V., Coon, Joshua J., Kiley, Patricia J., Bates, Donna M., Landick, Robert
Publicado 2014

Distinct hypertrophic cardiomyopathy genotypes result in convergent sarcomeric proteoform profiles revealed by top-down proteomics

por Tucholski, Trisha, Cai, Wenxuan, Gregorich, Zachery R., Bayne, Elizabeth F., Mitchell, Stanford D., McIlwain, Sean J., de Lange, Willem J., Wrobbel, Max, Karp, Hannah, Hite, Zachary, Vikhorev, Petr G., Marston, Steven B., Lal, Sean, Li, Amy, dos Remedios, Cristobal, Kohmoto, Takushi, Hermsen, Joshua, Ralphe, J. Carter, Kamp, Timothy J., Moss, Richard L., Ge, Ying
Publicado 2020

Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae

por Sato, Trey K., Tremaine, Mary, Parreiras, Lucas S., Hebert, Alexander S., Myers, Kevin S., Higbee, Alan J., Sardi, Maria, McIlwain, Sean J., Ong, Irene M., Breuer, Rebecca J., Avanasi Narasimhan, Ragothaman, McGee, Mick A., Dickinson, Quinn, La Reau, Alex, Xie, Dan, Tian, Mingyuan, Reed, Jennifer L., Zhang, Yaoping, Coon, Joshua J., Hittinger, Chris Todd, Gasch, Audrey P., Landick, Robert
Publicado 2016

Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae

por Sato, Trey K., Tremaine, Mary, Parreiras, Lucas S., Hebert, Alexander S., Myers, Kevin S., Higbee, Alan J., Sardi, Maria, McIlwain, Sean J., Ong, Irene M., Breuer, Rebecca J., Narasimhan, Ragothaman Avanasi, McGee, Mick A., Dickinson, Quinn, La Reau, Alex, Xie, Dan, Tian, Mingyuan, Piotrowski, Jeff S., Reed, Jennifer L., Zhang, Yaoping, Coon, Joshua J., Hittinger, Chris Todd, Gasch, Audrey P., Landick, Robert
Publicado 2016