Direct-acting antiviral resistance of Hepatitis C virus is promoted by epistasis

por Zhang, Hang, Quadeer, Ahmed Abdul, McKay, Matthew R.
Publicado 2023

Evolutionary modeling reveals enhanced mutational flexibility of HCV subtype 1b compared with 1a

por Zhang, Hang, Quadeer, Ahmed A., McKay, Matthew R.
Publicado 2021

Co-evolution networks of HIV/HCV are modular with direct association to structure and function

por Quadeer, Ahmed Abdul, Morales-Jimenez, David, McKay, Matthew R.
Publicado 2018

Preliminary Identification of Potential Vaccine Targets for the COVID-19 Coronavirus (SARS-CoV-2) Based on SARS-CoV Immunological Studies

por Ahmed, Syed Faraz, Quadeer, Ahmed A., McKay, Matthew R.
Publicado 2020

COVIDep: a web-based platform for real-time reporting of vaccine target recommendations for SARS-CoV-2

por Ahmed, Syed Faraz, Quadeer, Ahmed A., McKay, Matthew R.
Publicado 2020

Landscape of epitopes targeted by T cells in 852 individuals recovered from COVID-19: Meta-analysis, immunoprevalence, and web platform

por Quadeer, Ahmed Abdul, Ahmed, Syed Faraz, McKay, Matthew R.
Publicado 2021

SARS-CoV-2 T Cell Responses Elicited by COVID-19 Vaccines or Infection Are Expected to Remain Robust against Omicron

por Ahmed, Syed Faraz, Quadeer, Ahmed Abdul, McKay, Matthew R.
Publicado 2022

Identifying immunologically-vulnerable regions of the HCV E2 glycoprotein and broadly neutralizing antibodies that target them

por Quadeer, Ahmed A., Louie, Raymond H. Y., McKay, Matthew R.
Publicado 2019

Deconvolving mutational patterns of poliovirus outbreaks reveals its intrinsic fitness landscape

por Quadeer, Ahmed A., Barton, John P., Chakraborty, Arup K., McKay, Matthew R.
Publicado 2020

Cross-serotypically conserved epitope recommendations for a universal T cell-based dengue vaccine

por Ahmed, Syed Faraz, Quadeer, Ahmed A., Barton, John P., McKay, Matthew R.
Publicado 2020

In silico T cell epitope identification for SARS-CoV-2: Progress and perspectives

por Sohail, Muhammad Saqib, Ahmed, Syed Faraz, Quadeer, Ahmed Abdul, McKay, Matthew R.
Publicado 2021

Identification of Potential SARS-CoV-2 CD8(+) T Cell Escape Mutants

por Ahmed, Syed Faraz, Sohail, Muhammad Saqib, Quadeer, Ahmed Abdul, McKay, Matthew R.
Publicado 2022

Vaccinia-Virus-Based Vaccines Are Expected to Elicit Highly Cross-Reactive Immunity to the 2022 Monkeypox Virus

por Ahmed, Syed Faraz, Sohail, Muhammad Saqib, Quadeer, Ahmed Abdul, McKay, Matthew R.
Publicado 2022

Inferring Epistasis from Genetic Time-series Data

por Sohail, Muhammad Saqib, Louie, Raymond H Y, Hong, Zhenchen, Barton, John P, McKay, Matthew R
Publicado 2022

Fitness landscape of the human immunodeficiency virus envelope protein that is targeted by antibodies

por Louie, Raymond H. Y., Kaczorowski, Kevin J., Barton, John P., Chakraborty, Arup K., McKay, Matthew R.
Publicado 2018

Within-host genetic diversity of SARS-CoV-2 lineages in unvaccinated and vaccinated individuals

por Gu, Haogao, Quadeer, Ahmed Abdul, Krishnan, Pavithra, Ng, Daisy Y. M., Chang, Lydia D. J., Liu, Gigi Y. Z., Cheng, Samuel M. S., Lam, Tommy T. Y., Peiris, Malik, McKay, Matthew R., Poon, Leo L. M.
Publicado 2023

Within-host diversity of SARS-CoV-2 lineages and effect of vaccination

por Gu, Haogao, Quadeer, Ahmed Abdul, Krishnan, Pavithra, Ng, Daisy Y.M., Chang, Lydia D.J, Liu, Gigi Y.Z., Cheng, Samuel S.M., Lam, Tommy T.Y., Peiris, Malik, McKay, Matthew R., Poon, Leo L.M.
Publicado 2022