Accelerating the Inbreeding of Multi-Parental Recombinant Inbred Lines Generated By Sibling Matings

por Welsh, Catherine E., McMillan, Leonard
Publicado 2012

Comparative analysis and visualization of multiple collinear genomes

por Wang, Jeremy R, de Villena, Fernando Pardo-Manuel, McMillan, Leonard
Publicado 2012

FMLRC: Hybrid long read error correction using an FM-index

por Wang, Jeremy R., Holt, James, McMillan, Leonard, Jones, Corbin D.
Publicado 2018

A novel multi-alignment pipeline for high-throughput sequencing data

por Huang, Shunping, Holt, James, Kao, Chia-Yu, McMillan, Leonard, Wang, Wei
Publicado 2014

The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: implications for QTL discovery and systems genetics

por Roberts, Adam, Pardo-Manuel de Villena, Fernando, Wang, Wei, McMillan, Leonard, Threadgill, David W.
Publicado 2007

Efficient genome ancestry inference in complex pedigrees with inbreeding

por Liu, Eric Yi, Zhang, Qi, McMillan, Leonard, de Villena, Fernando Pardo-Manuel, Wang, Wei
Publicado 2010

GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference owing to RNA-seq reads misalignment

por Zhang, Zhaojun, Huang, Shunping, Wang, Jack, Zhang, Xiang, Pardo Manuel de Villena, Fernando, McMillan, Leonard, Wang, Wei
Publicado 2013

Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias

por Didion, John P, Yang, Hyuna, Sheppard, Keith, Fu, Chen-Ping, McMillan, Leonard, de Villena, Fernando Pardo-Manuel, Churchill, Gary A
Publicado 2012

Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers

por Morgan, Andrew P., Didion, John P., Doran, Anthony G., Holt, James M., McMillan, Leonard, Keane, Thomas M., de Villena, Fernando Pardo-Manuel
Publicado 2016

Genetic Architecture of Skewed X Inactivation in the Laboratory Mouse

por Calaway, John D., Lenarcic, Alan B., Didion, John P., Wang, Jeremy R., Searle, Jeremy B., McMillan, Leonard, Valdar, William, Pardo-Manuel de Villena, Fernando
Publicado 2013

Status and access to the Collaborative Cross population

por Welsh, Catherine E., Miller, Darla R., Manly, Kenneth F., Wang, Jeremy, McMillan, Leonard, Morahan, Grant, Mott, Richard, Iraqi, Fuad A., Threadgill, David W., de Villena, Fernando Pardo-Manuel
Publicado 2012

Erratum to: Status and access to the Collaborative Cross population

por Welsh, Catherine E., Miller, Darla R., Manly, Kenneth F., Wang, Jeremy, McMillan, Leonard, Morahan, Grant, Mott, Richard, Iraqi, Fuad A., Threadgill, David W., de Villena, Fernando Pardo-Manuel
Publicado 2014

A Diallel of the Mouse Collaborative Cross Founders Reveals Strong Strain-Specific Maternal Effects on Litter Size

por Shorter, John R., Maurizio, Paul L., Bell, Timothy A., Shaw, Ginger D., Miller, Darla R., Gooch, Terry J., Spence, Jason S., McMillan, Leonard, Valdar, William, Pardo-Manuel de Villena, Fernando
Publicado 2019

A New Polygenic Model for Nonfamilial Colorectal Cancer Inheritance Based on the Genetic Architecture of the Azoxymethane-Induced Mouse Model

por Bissahoyo, Anika C., Xie, Yuying, Yang, Lynda, Pearsall, R. Scott, Lee, Daekee, Elliott, Rosemary W., Demant, Peter, McMillan, Leonard, Pardo-Manuel de Villena, Fernando, Angel, Joe M., Threadgill, David W.
Publicado 2020

The Founder Strains of the Collaborative Cross Express a Complex Combination of Advantageous and Deleterious Traits for Male Reproduction

por Odet, Fanny, Pan, Wenqi, Bell, Timothy A., Goodson, Summer G., Stevans, Alicia M., Yun, Zianing, Aylor, David L., Kao, Chia-Yu, McMillan, Leonard, de Villena, Fernando Pardo-Manuel, O’Brien, Deborah A.
Publicado 2015

Transcriptome Atlases of Mouse Brain Reveals Differential Expression Across Brain Regions and Genetic Backgrounds

por Sun, Wei, Lee, Seunggeun, Zhabotynsky, Vasyl, Zou, Fei, Wright, Fred A., Crowley, James J., Yun, Zaining, Buus, Ryan J., Miller, Darla R., Wang, Jeremy, McMillan, Leonard, Pardo-Manuel de Villena, Fernando, Sullivan, Patrick F.
Publicado 2012

Whole Genome Sequencing and Progress Toward Full Inbreeding of the Mouse Collaborative Cross Population

por Shorter, John R., Najarian, Maya L., Bell, Timothy A., Blanchard, Matthew, Ferris, Martin T., Hock, Pablo, Kashfeen, Anwica, Kirchoff, Kathryn E., Linnertz, Colton L., Sigmon, J. Sebastian, Miller, Darla R., McMillan, Leonard, Pardo-Manuel de Villena, Fernando
Publicado 2019

Subspecific origin and haplotype diversity in the laboratory mouse

por Yang, Hyuna, Wang, Jeremy R, Didion, John P, Buus, Ryan J, Bell, Timothy A, Welsh, Catherine E, Bonhomme, François, Yu, Alex Hon-Tsen, Nachman, Michael W, Pialek, Jaroslav, Tucker, Priscilla, Boursot, Pierre, McMillan, Leonard, Churchill, Gary A, Pardo-Manuel de Villena, Fernando
Publicado 2011

Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross

por Gralinski, Lisa E., Ferris, Martin T., Aylor, David L., Whitmore, Alan C., Green, Richard, Frieman, Matthew B., Deming, Damon, Menachery, Vineet D., Miller, Darla R., Buus, Ryan J., Bell, Timothy A., Churchill, Gary A., Threadgill, David W., Katze, Michael G., McMillan, Leonard, Valdar, William, Heise, Mark T., Pardo-Manuel de Villena, Fernando, Baric, Ralph S.
Publicado 2015

Genomes of the Mouse Collaborative Cross

por Srivastava, Anuj, Morgan, Andrew P., Najarian, Maya L., Sarsani, Vishal Kumar, Sigmon, J. Sebastian, Shorter, John R., Kashfeen, Anwica, McMullan, Rachel C., Williams, Lucy H., Giusti-Rodríguez, Paola, Ferris, Martin T., Sullivan, Patrick, Hock, Pablo, Miller, Darla R., Bell, Timothy A., McMillan, Leonard, Churchill, Gary A., de Villena, Fernando Pardo-Manuel
Publicado 2017