phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

por McMurdie, Paul J., Holmes, Susan
Publicado 2013

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

por McMurdie, Paul J., Holmes, Susan
Publicado 2014

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking

por McMurdie, Paul J., Holmes, Susan
Publicado 2015

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

por Callahan, Benjamin J, McMurdie, Paul J, Holmes, Susan P
Publicado 2017

Site-Specific Mobilization of Vinyl Chloride Respiration Islands by a Mechanism Common in Dehalococcoides

por McMurdie, Paul J, Hug, Laura A, Edwards, Elizabeth A, Holmes, Susan, Spormann, Alfred M
Publicado 2011

Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses

por Callahan, Ben J., Sankaran, Kris, Fukuyama, Julia A., McMurdie, Paul J., Holmes, Susan P.
Publicado 2016

DADA2: High resolution sample inference from Illumina amplicon data

por Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P
Publicado 2016

Butyrate-producing human gut symbiont, Clostridium butyricum, and its role in health and disease

por Stoeva, Magdalena K., Garcia-So, Jeewon, Justice, Nicholas, Myers, Julia, Tyagi, Surabhi, Nemchek, Madeleine, McMurdie, Paul J., Kolterman, Orville, Eid, John
Publicado 2021

Increased circulating butyrate and ursodeoxycholate during probiotic intervention in humans with type 2 diabetes

por McMurdie, Paul J., Stoeva, Magdalena K., Justice, Nicholas, Nemchek, Madeleine, Sieber, Christian M. K., Tyagi, Surabhi, Gines, Jessica, Skennerton, Connor T., Souza, Michael, Kolterman, Orville, Eid, John
Publicado 2022

Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides

por McMurdie, Paul J., Behrens, Sebastian F., Müller, Jochen A., Göke, Jonathan, Ritalahti, Kirsti M., Wagner, Ryan, Goltsman, Eugene, Lapidus, Alla, Holmes, Susan, Löffler, Frank E., Spormann, Alfred M.
Publicado 2009

Improvements to postprandial glucose control in subjects with type 2 diabetes: a multicenter, double blind, randomized placebo-controlled trial of a novel probiotic formulation

por Perraudeau, Fanny, McMurdie, Paul, Bullard, James, Cheng, Andrew, Cutcliffe, Colleen, Deo, Achal, Eid, John, Gines, Jessica, Iyer, Mohan, Justice, Nicholas, Loo, Wesley T, Nemchek, Madeleine, Schicklberger, Marcus, Souza, Michael, Stoneburner, Brendon, Tyagi, Surabhi, Kolterman, Orville
Publicado 2020