Optimization of miRNA-seq data preprocessing

por Tam, Shirley, Tsao, Ming-Sound, McPherson, John D.
Publicado 2015

Novel POFUT1 mutation in patient with flexural and acral hyperpigmented reticulated macules presenting in adolescence

por Kiuru, Maija, Terrell, Jessica R., Gorouhi, Farzam, McPherson, John D.
Publicado 2020

Dr.Nod: computational framework for discovery of regulatory non-coding drivers in tissue-matched distal regulatory elements

por Tomkova, Marketa, Tomek, Jakub, Chow, Julie, McPherson, John D, Segal, David J, Hormozdiari, Fereydoun
Publicado 2023

ISOWN: accurate somatic mutation identification in the absence of normal tissue controls

por Kalatskaya, Irina, Trinh, Quang M., Spears, Melanie, McPherson, John D., Bartlett, John M. S., Stein, Lincoln
Publicado 2017

A Two-Dimensional Pooling Strategy for Rare Variant Detection on Next-Generation Sequencing Platforms

por Zuzarte, Philip C., Denroche, Robert E., Fehringer, Gordon, Katzov-Eckert, Hagit, Hung, Rayjean J., McPherson, John D.
Publicado 2014

Environmental pesticide exposure and non-Hodgkin lymphoma survival: a population-based study

por Poh, Christina, McPherson, John D., Tuscano, Joseph, Li, Qian, Parikh-Patel, Arti, Vogel, Christoph F. A., Cockburn, Myles, Keegan, Theresa
Publicado 2022

A cancer cell-line titration series for evaluating somatic classification

por Denroche, Robert E., Mullen, Laura, Timms, Lee, Beck, Timothy, Yung, Christina K., Stein, Lincoln, McPherson, John D., Brown, Andrew M. K.
Publicado 2015

Microscopy with ultraviolet surface excitation for rapid slide-free histology

por Fereidouni, Farzad, Harmany, Zachary T., Tian, Miao, Todd, Austin, Kintner, John A., McPherson, John D., Borowsky, Alexander D., Lechpammer, Mirna, Bishop, John, Demos, Stavros G., Levenson, Richard
Publicado 2017

Use of Sequenom Sample ID Plus® SNP Genotyping in Identification of FFPE Tumor Samples

por Miller, Jessica K., Buchner, Nicholas, Timms, Lee, Tam, Shirley, Luo, Xuemei, Brown, Andrew M. K., Pasternack, Danielle, Bristow, Robert G., Fraser, Michael, Boutros, Paul C., McPherson, John D.
Publicado 2014

Regional perturbation of gene transcription is associated with intrachromosomal rearrangements and gene fusion transcripts in high grade ovarian cancer

por Krzyzanowski, Paul M., Sircoulomb, Fabrice, Yousif, Fouad, Normand, Josee, La Rose, Jose, E. Francis, Kyle, Suarez, Fernando, Beck, Tim, McPherson, John D., Stein, Lincoln D., Rottapel, Robert K.
Publicado 2019

Lineage-Specific Expansions of Retroviral Insertions within the Genomes of African Great Apes but Not Humans and Orangutans

por Yohn, Chris T, Jiang, Zhaoshi, McGrath, Sean D, Hayden, Karen E, Khaitovich, Philipp, Johnson, Matthew E, Eichler, Marla Y, McPherson, John D, Zhao, Shaying, Pääbo, Svante, Eichler, Evan E
Publicado 2005

Antioxidant Supplementation Reduces Genomic Aberrations in Human Induced Pluripotent Stem Cells

por Ji, Junfeng, Sharma, Vivek, Qi, Suxia, Guarch, Meritxell Espino, Zhao, Ping, Luo, Zhiwei, Fan, Wenxia, Wang, Yu, Mbabaali, Faridah, Neculai, Dante, Esteban, Miguel Angel, McPherson, John D., Batada, Nizar N.
Publicado 2014

Cryptic genomic lesions in adverse-risk acute myeloid leukemia identified by integrated whole genome and transcriptome sequencing

por Kim, Jaeseung C., Zuzarte, Philip C., Murphy, Tracy, Chan-Seng-Yue, Michelle, Brown, Andrew M. K., Krzyzanowski, Paul M., Smith, Adam C., Notta, Faiyaz, Minden, Mark D., McPherson, John D.
Publicado 2019

Exome sequencing identifies nonsegregating nonsense ATM and PALB2 variants in familial pancreatic cancer

por Grant, Robert C, Al-Sukhni, Wigdan, Borgida, Ayelet E, Holter, Spring, Kanji, Zaheer S, McPherson, Treasa, Whelan, Emily, Serra, Stefano, Trinh, Quang M, Peltekova, Vanya, Stein, Lincoln D, McPherson, John D, Gallinger, Steven
Publicado 2013

ShatterProof: operational detection and quantification of chromothripsis

por Govind, Shaylan K, Zia, Amin, Hennings-Yeomans, Pablo H, Watson, John D, Fraser, Michael, Anghel, Catalina, Wyatt, Alexander W, van der Kwast, Theodorus, Collins, Colin C, McPherson, John D, Bristow, Robert G, Boutros, Paul C
Publicado 2014

A distinct subpopulation of leukemia initiating cells in acute precursor B lymphoblastic leukemia: quiescent phenotype and unique transcriptomic profile

por Lee, Alex Q., Konishi, Hiroaki, Duong, Connie, Yoshida, Sakiko, Davis, Ryan R., Van Dyke, Jonathan E., Ijiri, Masami, McLaughlin, Bridget, Kim, Kyoungmi, Li, Yueju, Beckett, Laurel, Nitin, Nitin, McPherson, John D., Tepper, Clifford G., Satake, Noriko
Publicado 2022

Recurrent noncoding regulatory mutations in pancreatic ductal adenocarcinoma

por Feigin, Michael E., Garvin, Tyler, Bailey, Peter, Waddell, Nicola, Chang, David K., Kelley, David R., Shuai, Shimin, Gallinger, Steven, McPherson, John D., Grimmond, Sean M., Khurana, Ekta, Stein, Lincoln D., Biankin, Andrew V., Schatz, Michael C., Tuveson, David A.
Publicado 2017

Identification of Novel High-Frequency DNA Methylation Changes in Breast Cancer

por Ordway, Jared M., Budiman, Muhammad A., Korshunova, Yulia, Maloney, Rebecca K., Bedell, Joseph A., Citek, Robert W., Bacher, Blaire, Peterson, Seth, Rohlfing, Tracy, Hall, Jacqueline, Brown, Robert, Lakey, Nathan, Doerge, Rebecca W., Martienssen, Robert A., Leon, Jorge, McPherson, John D., Jeddeloh, Jeffrey A.
Publicado 2007

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

por Nattestad, Maria, Goodwin, Sara, Ng, Karen, Baslan, Timour, Sedlazeck, Fritz J., Rescheneder, Philipp, Garvin, Tyler, Fang, Han, Gurtowski, James, Hutton, Elizabeth, Tseng, Elizabeth, Chin, Chen-Shan, Beck, Timothy, Sundaravadanam, Yogi, Kramer, Melissa, Antoniou, Eric, McPherson, John D., Hicks, James, McCombie, W. Richard, Schatz, Michael C.
Publicado 2018

Mitochondrial mutations drive prostate cancer aggression

por Hopkins, Julia F., Sabelnykova, Veronica Y., Weischenfeldt, Joachim, Simon, Ronald, Aguiar, Jennifer A., Alkallas, Rached, Heisler, Lawrence E., Zhang, Junyan, Watson, John D., Chua, Melvin L. K., Fraser, Michael, Favero, Francesco, Lawerenz, Chris, Plass, Christoph, Sauter, Guido, McPherson, John D., van der Kwast, Theodorus, Korbel, Jan, Schlomm, Thorsten, Bristow, Robert G., Boutros, Paul C.
Publicado 2017