A compiler for biological networks on silicon chips

por Medley, J. Kyle, Teo, Jonathan, Woo, Sung Sik, Hellerstein, Joseph, Sarpeshkar, Rahul, Sauro, Herbert M.
Publicado 2020

The metabolome of Mexican cavefish shows a convergent signature highlighting sugar, antioxidant, and Ageing-Related metabolites

por Medley, J Kyle, Persons, Jenna, Biswas, Tathagata, Olsen, Luke, Peuß, Robert, Krishnan, Jaya, Xiong, Shaolei, Rohner, Nicolas
Publicado 2022

Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology

por Medley, J. Kyle, Choi, Kiri, König, Matthias, Smith, Lucian, Gu, Stanley, Hellerstein, Joseph, Sealfon, Stuart C., Sauro, Herbert M.
Publicado 2018

Metabolic reprogramming underlies cavefish muscular endurance despite loss of muscle mass and contractility

por Olsen, Luke, Levy, Michaella, Medley, J. Kyle, Hassan, Huzaifa, Miller, Brandon, Alexander, Richard, Wilcock, Emma, Yi, Kexi, Florens, Laurence, Weaver, Kyle, McKinney, Sean A., Peuß, Robert, Persons, Jenna, Kenzior, Alexander, Maldonado, Ernesto, Delventhal, Kym, Gluesenkamp, Andrew, Mager, Edward, Coughlin, David, Rohner, Nicolas
Publicado 2023

Toward community standards and software for whole-cell modeling

por Waltemath, Dagmar, Karr, Jonathan R., Bergmann, Frank T., Chelliah, Vijayalakshmi, Hucka, Michael, Krantz, Marcus, Liebermeister, Wolfram, Mendes, Pedro, Myers, Chris J., Pir, Pinar, Alaybeyoglu, Begum, Aranganathan, Naveen K, Baghalian, Kambiz, Bittig, Arne T., Pinto Burke, Paulo E., Cantarelli, Matteo, Chew, Yin Hoon, Costa, Rafael S., Cursons, Joseph, Czauderna, Tobias, Goldberg, Arthur P., Gómez, Harold F., Hahn, Jens, Hameri, Tuure, Hernandez Gardiol, Daniel F., Kazakiewicz, Denis, Kiselev, Ilya, Knight-Schrijver, Vincent, Knüpfer, Christian, König, Matthias, Lee, Daewon, Lloret-Villas, Audald, Mandrik, Nikita, Medley, J. Kyle, Moreau, Bertrand, Naderi-Meshkin, Hojjat, Palaniappan, Sucheendra K., Priego-Espinosa, Daniel, Scharm, Martin, Sharma, Mahesh, Smallbone, Kieran, Stanford, Natalie J., Song, Je-Hoon, Theile, Tom, Tokic, Milenko, Tomar, Namrata, Touré, Vasundra, Uhlendorf, Jannis, Varusai, Thawfeek M, Watanabe, Leandro H., Wendland, Florian, Wolfien, Markus, Yurkovich, James T., Zhu, Yan, Zardilis, Argyris, Zhukova, Anna, Schreiber, Falk
Publicado 2016

BioSimulators: a central registry of simulation engines and services for recommending specific tools

por Shaikh, Bilal, Smith, Lucian P, Vasilescu, Dan, Marupilla, Gnaneswara, Wilson, Michael, Agmon, Eran, Agnew, Henry, Andrews, Steven S, Anwar, Azraf, Beber, Moritz E, Bergmann, Frank T, Brooks, David, Brusch, Lutz, Calzone, Laurence, Choi, Kiri, Cooper, Joshua, Detloff, John, Drawert, Brian, Dumontier, Michel, Ermentrout, G Bard, Faeder, James R, Freiburger, Andrew P, Fröhlich, Fabian, Funahashi, Akira, Garny, Alan, Gennari, John H, Gleeson, Padraig, Goelzer, Anne, Haiman, Zachary, Hasenauer, Jan, Hellerstein, Joseph L, Hermjakob, Henning, Hoops, Stefan, Ison, Jon C, Jahn, Diego, Jakubowski, Henry V, Jordan, Ryann, Kalaš, Matúš, König, Matthias, Liebermeister, Wolfram, Sheriff, Rahuman S Malik, Mandal, Synchon, McDougal, Robert, Medley, J Kyle, Mendes, Pedro, Müller, Robert, Myers, Chris J, Naldi, Aurelien, Nguyen, Tung V N, Nickerson, David P, Olivier, Brett G, Patoliya, Drashti, Paulevé, Loïc, Petzold, Linda R, Priya, Ankita, Rampadarath, Anand K, Rohwer, Johann M, Saglam, Ali S, Singh, Dilawar, Sinha, Ankur, Snoep, Jacky, Sorby, Hugh, Spangler, Ryan, Starruß, Jörn, Thomas, Payton J, van Niekerk, David, Weindl, Daniel, Zhang, Fengkai, Zhukova, Anna, Goldberg, Arthur P, Schaff, James C, Blinov, Michael L, Sauro, Herbert M, Moraru, Ion I, Karr, Jonathan R
Publicado 2022