Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning

por Medlock, Gregory L., Papin, Jason A.
Publicado 2020

Medusa: Software to build and analyze ensembles of genome-scale metabolic network reconstructions

por Medlock, Gregory L., Moutinho, Thomas J., Papin, Jason A.
Publicado 2020

Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models

por Carey, Maureen A., Medlock, Gregory L., Stolarczyk, Michał, Petri, William A., Guler, Jennifer L., Papin, Jason A.
Publicado 2022

Novel co-culture plate enables growth dynamic-based assessment of contact-independent microbial interactions

por Moutinho, Thomas J., Panagides, John C., Biggs, Matthew B., Medlock, Gregory L., Kolling, Glynis L., Papin, Jason A.
Publicado 2017

Systems-level metabolism of the altered Schaedler flora, a complete gut microbiota

por Biggs, Matthew B, Medlock, Gregory L, Moutinho, Thomas J, Lees, Hannah J, Swann, Jonathan R, Kolling, Glynis L, Papin, Jason A
Publicado 2017

Influential Parameters for the Analysis of Intracellular Parasite Metabolomics

por Carey, Maureen A., Covelli, Vincent, Brown, Audrey, Medlock, Gregory L., Haaren, Mareike, Cooper, Jessica G., Papin, Jason A., Guler, Jennifer L.
Publicado 2018

2521. VE707, a Defined Live Biotherapeutic Product for Prevention of Infection by Multidrug-Resistant Gram-Negative Bacteria

por Medlock, Gregory, Felix, Cintia, Alsharif, Wajd, Cornacchione, Lou, Schinn, Matthew, Watson, Andrea, Bedard-Shurtleff, Suzanne, Norman, Jason, Faith, Jeremiah, Kuijper, Ed J, Olle, Bernat, Caballero, Silvia
Publicado 2023

A novel mouse model of Campylobacter jejuni enteropathy and diarrhea

por Giallourou, Natasa, Medlock, Gregory L., Bolick, David T., Medeiros, Pedro HQS, Ledwaba, Solanka E., Kolling, Glynis L., Tung, Kenneth, Guerry, Patricia, Swann, Jonathan R., Guerrant, Richard L.
Publicado 2018

Enhancing Microbiome Research through Genome-Scale Metabolic Modeling

por Ankrah, Nana Y. D., Bernstein, David B., Biggs, Matthew, Carey, Maureen, Engevik, Melinda, García-Jiménez, Beatriz, Lakshmanan, Meiyappan, Pacheco, Alan R., Sulheim, Snorre, Medlock, Gregory L.
Publicado 2021

Megasphaera in the Stool Microbiota Is Negatively Associated With Diarrheal Cryptosporidiosis

por Carey, Maureen A, Medlock, Gregory L, Alam, Masud, Kabir, Mamun, Uddin, Md Jashim, Nayak, Uma, Papin, Jason, Faruque, A S G, Haque, Rashidul, Petri, William A, Gilchrist, Carol A
Publicado 2021

Cross-modulation of pathogen-specific pathways enhances malnutrition during enteric co-infection with Giardia lamblia and enteroaggregative Escherichia coli

por Bartelt, Luther A., Bolick, David T., Mayneris-Perxachs, Jordi, Kolling, Glynis L., Medlock, Gregory L., Zaenker, Edna I., Donowitz, Jeffery, Thomas-Beckett, Rose Viguna, Rogala, Allison, Carroll, Ian M., Singer, Steven M., Papin, Jason, Swann, Jonathan R., Guerrant, Richard L.
Publicado 2017

MEMOTE for standardized genome-scale metabolic model testing

por Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Malik Sheriff, Rahuman S., Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng
Publicado 2020

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

por Lieven, Christian, Beber, Moritz E., Olivier, Brett G., Bergmann, Frank T., Ataman, Meric, Babaei, Parizad, Bartell, Jennifer A., Blank, Lars M., Chauhan, Siddharth, Correia, Kevin, Diener, Christian, Dräger, Andreas, Ebert, Birgitta E., Edirisinghe, Janaka N., Faria, José P., Feist, Adam M., Fengos, Georgios, Fleming, Ronan M. T., García-Jiménez, Beatriz, Hatzimanikatis, Vassily, van Helvoirt, Wout, Henry, Christopher S., Hermjakob, Henning, Herrgård, Markus J., Kaafarani, Ali, Kim, Hyun Uk, King, Zachary, Klamt, Steffen, Klipp, Edda, Koehorst, Jasper J., König, Matthias, Lakshmanan, Meiyappan, Lee, Dong-Yup, Lee, Sang Yup, Lee, Sunjae, Lewis, Nathan E., Liu, Filipe, Ma, Hongwu, Machado, Daniel, Mahadevan, Radhakrishnan, Maia, Paulo, Mardinoglu, Adil, Medlock, Gregory L., Monk, Jonathan M., Nielsen, Jens, Nielsen, Lars Keld, Nogales, Juan, Nookaew, Intawat, Palsson, Bernhard O., Papin, Jason A., Patil, Kiran R., Poolman, Mark, Price, Nathan D., Resendis-Antonio, Osbaldo, Richelle, Anne, Rocha, Isabel, Sánchez, Benjamín J., Schaap, Peter J., Sheriff, Rahuman S. Malik, Shoaie, Saeed, Sonnenschein, Nikolaus, Teusink, Bas, Vilaça, Paulo, Vik, Jon Olav, Wodke, Judith A. H., Xavier, Joana C., Yuan, Qianqian, Zakhartsev, Maksim, Zhang, Cheng
Publicado 2020