PhenStat: A Tool Kit for Standardized Analysis of High Throughput Phenotypic Data

por Kurbatova, Natalja, Mason, Jeremy C., Morgan, Hugh, Meehan, Terrence F., Karp, Natasha A.
Publicado 2015

Reporting phenotypes in mouse models when considering body size as a potential confounder

por Oellrich, Anika, Meehan, Terrence F., Parkinson, Helen, Sarntivijai, Sirarat, White, Jacqueline K., Karp, Natasha A.
Publicado 2016

Ten simple rules for annotating sequencing experiments

por Stevens, Irene, Mukarram, Abdul Kadir, Hörtenhuber, Matthias, Meehan, Terrence F., Rung, Johan, Daub, Carsten O.
Publicado 2020

OpenStats: A robust and scalable software package for reproducible analysis of high-throughput phenotypic data

por Haselimashhadi, Hamed, Mason, Jeremy C., Mallon, Ann-Marie, Smedley, Damian, Meehan, Terrence F., Parkinson, Helen
Publicado 2020

Logical Development of the Cell Ontology

por Meehan, Terrence F, Masci, Anna Maria, Abdulla, Amina, Cowell, Lindsay G, Blake, Judith A, Mungall, Christopher J, Diehl, Alexander D
Publicado 2011

Ontology based molecular signatures for immune cell types via gene expression analysis

por Meehan, Terrence F, Vasilevsky, Nicole A, Mungall, Christopher J, Dougall, David S, Haendel, Melissa A, Blake, Judith A, Diehl, Alexander D
Publicado 2013

Protection against colitis by CD100 dependent modulation of intraepithelial γδ T lymphocyte function

por Meehan, Terrence F., Witherden, Deborah A., Kim, Chang-Hoon, Sendaydiego, Kevin, Ye, Ivan, Garijo, Olivia, Komori, H. Kiyomi, Kumanogoh, Atsushi, Kikutani, Hitoshi, Eckmann, Lars, Havran, Wendy L.
Publicado 2013

PDX Finder: A portal for patient-derived tumor xenograft model discovery

por Conte, Nathalie, Mason, Jeremy C, Halmagyi, Csaba, Neuhauser, Steven, Mosaku, Abayomi, Yordanova, Galabina, Chatzipli, Aikaterini, Begley, Dale A, Krupke, Debra M, Parkinson, Helen, Meehan, Terrence F, Bult, Carol C
Publicado 2019

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

por Diehl, Alexander D., Meehan, Terrence F., Bradford, Yvonne M., Brush, Matthew H., Dahdul, Wasila M., Dougall, David S., He, Yongqun, Osumi-Sutherland, David, Ruttenberg, Alan, Sarntivijai, Sirarat, Van Slyke, Ceri E., Vasilevsky, Nicole A., Haendel, Melissa A., Blake, Judith A., Mungall, Christopher J.
Publicado 2016

The EurOPDX Data Portal: an open platform for patient-derived cancer xenograft data sharing and visualization

por Dudová, Zdenka, Conte, Nathalie, Mason, Jeremy, Stuchlík, Dalibor, Peša, Radim, Halmagyi, Csaba, Perova, Zinaida, Mosaku, Abayomi, Thorne, Ross, Follette, Alex, Pivarč, Ľuboslav, Šašinka, Radim, Usman, Muhammad, Neuhauser, Steven, Begley, Dale A., Krupke, Debra M., Frassà, Massimiliano, Fiori, Alessandro, Corsi, Riccardo, Vezzadini, Luca, Isella, Claudio, Bertotti, Andrea, Bult, Carol, Parkinson, Helen, Medico, Enzo, Meehan, Terrence, Křenek, Aleš
Publicado 2022

CLO: The cell line ontology

por Sarntivijai, Sirarat, Lin, Yu, Xiang, Zuoshuang, Meehan, Terrence F, Diehl, Alexander D, Vempati, Uma D, Schürer, Stephan C, Pang, Chao, Malone, James, Parkinson, Helen, Liu, Yue, Takatsuki, Terue, Saijo, Kaoru, Masuya, Hiroshi, Nakamura, Yukio, Brush, Matthew H, Haendel, Melissa A, Zheng, Jie, Stoeckert, Christian J, Peters, Bjoern, Mungall, Christopher J, Carey, Thomas E, States, David J, Athey, Brian D, He, Yongqun
Publicado 2014

A mouse informatics platform for phenotypic and translational discovery

por Ring, Natalie, Meehan, Terrence F., Blake, Andrew, Brown, James, Chen, Chao-Kung, Conte, Nathalie, Di Fenza, Armida, Fiegel, Tanja, Horner, Neil, Jacobsen, Julius O. B., Karp, Natasha, Lawson, Thomas, Mason, Jeremy C., Matthews, Peter, Morgan, Hugh, Relac, Mike, Santos, Luis, Smedley, Damian, Sneddon, Duncan, Pengelly, Alice, Tudose, Ilinca, Warren, Jonathan W. G., Westerberg, Henrik, Yaikhom, Gagarine, Parkinson, Helen, Mallon, Ann-Marie
Publicado 2015

The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservation

por Muñoz-Fuentes, Violeta, Cacheiro, Pilar, Meehan, Terrence F., Aguilar-Pimentel, Juan Antonio, Brown, Steve D. M., Flenniken, Ann M., Flicek, Paul, Galli, Antonella, Mashhadi, Hamed Haseli, Hrabě de Angelis, Martin, Kim, Jong Kyoung, Lloyd, K. C. Kent, McKerlie, Colin, Morgan, Hugh, Murray, Stephen A., Nutter, Lauryl M. J., Reilly, Patrick T., Seavitt, John R., Seong, Je Kyung, Simon, Michelle, Wardle-Jones, Hannah, Mallon, Ann-Marie, Smedley, Damian, Parkinson, Helen E.
Publicado 2018

The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data

por Koscielny, Gautier, Yaikhom, Gagarine, Iyer, Vivek, Meehan, Terrence F., Morgan, Hugh, Atienza-Herrero, Julian, Blake, Andrew, Chen, Chao-Kung, Easty, Richard, Di Fenza, Armida, Fiegel, Tanja, Grifiths, Mark, Horne, Alan, Karp, Natasha A., Kurbatova, Natalja, Mason, Jeremy C., Matthews, Peter, Oakley, Darren J., Qazi, Asfand, Regnart, Jack, Retha, Ahmad, Santos, Luis A., Sneddon, Duncan J., Warren, Jonathan, Westerberg, Henrik, Wilson, Robert J., Melvin, David G., Smedley, Damian, Brown, Steve D. M., Flicek, Paul, Skarnes, William C., Mallon, Ann-Marie, Parkinson, Helen
Publicado 2014

Gateways to the FANTOM5 promoter level mammalian expression atlas

por Lizio, Marina, Harshbarger, Jayson, Shimoji, Hisashi, Severin, Jessica, Kasukawa, Takeya, Sahin, Serkan, Abugessaisa, Imad, Fukuda, Shiro, Hori, Fumi, Ishikawa-Kato, Sachi, Mungall, Christopher J, Arner, Erik, Baillie, J Kenneth, Bertin, Nicolas, Bono, Hidemasa, de Hoon, Michiel, Diehl, Alexander D, Dimont, Emmanuel, Freeman, Tom C, Fujieda, Kaori, Hide, Winston, Kaliyaperumal, Rajaram, Katayama, Toshiaki, Lassmann, Timo, Meehan, Terrence F, Nishikata, Koro, Ono, Hiromasa, Rehli, Michael, Sandelin, Albin, Schultes, Erik A, ‘t Hoen, Peter AC, Tatum, Zuotian, Thompson, Mark, Toyoda, Tetsuro, Wright, Derek W, Daub, Carsten O, Itoh, Masayoshi, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair RR, Kawaji, Hideya
Publicado 2015

Prevalence of sexual dimorphism in mammalian phenotypic traits

por Karp, Natasha A., Mason, Jeremy, Beaudet, Arthur L., Benjamini, Yoav, Bower, Lynette, Braun, Robert E., Brown, Steve D.M., Chesler, Elissa J., Dickinson, Mary E., Flenniken, Ann M., Fuchs, Helmut, Angelis, Martin Hrabe de, Gao, Xiang, Guo, Shiying, Greenaway, Simon, Heller, Ruth, Herault, Yann, Justice, Monica J., Kurbatova, Natalja, Lelliott, Christopher J., Lloyd, K.C. Kent, Mallon, Ann-Marie, Mank, Judith E., Masuya, Hiroshi, McKerlie, Colin, Meehan, Terrence F., Mott, Richard F., Murray, Stephen A., Parkinson, Helen, Ramirez-Solis, Ramiro, Santos, Luis, Seavitt, John R., Smedley, Damian, Sorg, Tania, Speak, Anneliese O., Steel, Karen P., Svenson, Karen L., Wakana, Shigeharu, West, David, Wells, Sara, Westerberg, Henrik, Yaacoby, Shay, White, Jacqueline K.
Publicado 2017

Human and mouse essentiality screens as a resource for disease gene discovery

por Cacheiro, Pilar, Muñoz-Fuentes, Violeta, Murray, Stephen A., Dickinson, Mary E., Bucan, Maja, Nutter, Lauryl M. J., Peterson, Kevin A., Haselimashhadi, Hamed, Flenniken, Ann M., Morgan, Hugh, Westerberg, Henrik, Konopka, Tomasz, Hsu, Chih-Wei, Christiansen, Audrey, Lanza, Denise G., Beaudet, Arthur L., Heaney, Jason D., Fuchs, Helmut, Gailus-Durner, Valerie, Sorg, Tania, Prochazka, Jan, Novosadova, Vendula, Lelliott, Christopher J., Wardle-Jones, Hannah, Wells, Sara, Teboul, Lydia, Cater, Heather, Stewart, Michelle, Hough, Tertius, Wurst, Wolfgang, Sedlacek, Radislav, Adams, David J., Seavitt, John R., Tocchini-Valentini, Glauco, Mammano, Fabio, Braun, Robert E., McKerlie, Colin, Herault, Yann, de Angelis, Martin Hrabě, Mallon, Ann-Marie, Lloyd, K. C.  Kent, Brown, Steve D. M., Parkinson, Helen, Meehan, Terrence F., Smedley, Damian
Publicado 2020

The Deep Genome Project

por Lloyd, K. C. Kent, Adams, David J., Baynam, Gareth, Beaudet, Arthur L., Bosch, Fatima, Boycott, Kym M., Braun, Robert E., Caulfield, Mark, Cohn, Ronald, Dickinson, Mary E., Dobbie, Michael S., Flenniken, Ann M., Flicek, Paul, Galande, Sanjeev, Gao, Xiang, Grobler, Anne, Heaney, Jason D., Herault, Yann, de Angelis, Martin Hrabě, Lupski, James R., Lyonnet, Stanislas, Mallon, Ann-Marie, Mammano, Fabio, MacRae, Calum A., McInnes, Roderick, McKerlie, Colin, Meehan, Terrence F., Murray, Stephen A., Nutter, Lauryl M. J., Obata, Yuichi, Parkinson, Helen, Pepper, Michael S., Sedlacek, Radislav, Seong, Je Kyung, Shiroishi, Toshihiko, Smedley, Damian, Tocchini-Valentini, Glauco, Valle, David, Wang, Chi-Kuang Leo, Wells, Sara, White, Jacqueline, Wurst, Wolfgang, Xu, Ying, Brown, Steve D. M.
Publicado 2020

A large scale hearing loss screen reveals an extensive unexplored genetic landscape for auditory dysfunction

por Bowl, Michael R., Simon, Michelle M., Ingham, Neil J., Greenaway, Simon, Santos, Luis, Cater, Heather, Taylor, Sarah, Mason, Jeremy, Kurbatova, Natalja, Pearson, Selina, Bower, Lynette R., Clary, Dave A., Meziane, Hamid, Reilly, Patrick, Minowa, Osamu, Kelsey, Lois, Tocchini-Valentini, Glauco P., Gao, Xiang, Bradley, Allan, Skarnes, William C., Moore, Mark, Beaudet, Arthur L., Justice, Monica J., Seavitt, John, Dickinson, Mary E., Wurst, Wolfgang, de Angelis, Martin Hrabe, Herault, Yann, Wakana, Shigeharu, Nutter, Lauryl M. J., Flenniken, Ann M., McKerlie, Colin, Murray, Stephen A., Svenson, Karen L., Braun, Robert E., West, David B., Lloyd, K. C. Kent, Adams, David J., White, Jacqui, Karp, Natasha, Flicek, Paul, Smedley, Damian, Meehan, Terrence F., Parkinson, Helen E., Teboul, Lydia M., Wells, Sara, Steel, Karen P., Mallon, Ann-Marie, Brown, Steve D. M.
Publicado 2017

Disease Model Discovery from 3,328 Gene Knockouts by The International Mouse Phenotyping Consortium

por Meehan, Terrence F., Conte, Nathalie, West, David B., Jacobsen, Julius O., Mason, Jeremy, Warren, Jonathan, Chen, Chao-Kung, Tudose, Ilinca, Relac, Mike, Matthews, Peter, Karp, Natasha, Santos, Luis, Fiegel, Tanja, Ring, Natalie, Westerberg, Henrik, Greenaway, Simon, Sneddon, Duncan, Morgan, Hugh, Codner, Gemma F, Stewart, Michelle E, Brown, James, Horner, Neil, Haendel, Melissa, Washington, Nicole, Mungall, Christopher J., Reynolds, Corey L, Gallegos, Juan, Gailus-Durner, Valerie, Sorg, Tania, Pavlovic, Guillaume, Bower, Lynette R, Moore, Mark, Morse, Iva, Gao, Xiang, Tocchini-Valentini, Glauco P, Obata, Yuichi, Cho, Soo Young, Seong, Je Kyung, Seavitt, John, Beaudet, Arthur L., Dickinson, Mary E., Herault, Yann, Wurst, Wolfgang, de Angelis, Martin Hrabe, Lloyd, K.C. Kent, Flenniken, Ann M, Nutter, Lauryl MJ, Newbigging, Susan, McKerlie, Colin, Justice, Monica J., Murray, Stephen A., Svenson, Karen L., Braun, Robert E., White, Jacqueline K., Bradley, Allan, Flicek, Paul, Wells, Sara, Skarnes, William C., Adams, David J., Parkinson, Helen, Mallon, Ann-Marie, Brown, Steve D.M., Smedley, Damian
Publicado 2017