Application of referenced thermodynamic integration to Bayesian model selection

por Hawryluk, Iwona, Mishra, Swapnil, Flaxman, Seth, Bhatt, Samir, Mellan, Thomas A.
Publicado 2023

Unifying incidence and prevalence under a time-varying general branching process

por Pakkanen, Mikko S., Miscouridou, Xenia, Penn, Matthew J., Whittaker, Charles, Berah, Tresnia, Mishra, Swapnil, Mellan, Thomas A., Bhatt, Samir
Publicado 2023

Inference of COVID-19 epidemiological distributions from Brazilian hospital data

por Hawryluk, Iwona, Mellan, Thomas A., Hoeltgebaum, Henrique, Mishra, Swapnil, Schnekenberg, Ricardo P., Whittaker, Charles, Zhu, Harrison, Gandy, Axel, Donnelly, Christl A., Flaxman, Seth, Bhatt, Samir
Publicado 2020

Comparing the responses of the UK, Sweden and Denmark to COVID-19 using counterfactual modelling

por Mishra, Swapnil, Scott, James A., Laydon, Daniel J., Flaxman, Seth, Gandy, Axel, Mellan, Thomas A., Unwin, H. Juliette T., Vollmer, Michaela, Coupland, Helen, Ratmann, Oliver, Monod, Melodie, Zhu, Harrison H., Cori, Anne, Gaythorpe, Katy A. M., Whittles, Lilith K., Whittaker, Charles, Donnelly, Christl A., Ferguson, Neil M., Bhatt, Samir
Publicado 2021

Estimating the COVID-19 infection fatality ratio accounting for seroreversion using statistical modelling

por Brazeau, Nicholas F., Verity, Robert, Jenks, Sara, Fu, Han, Whittaker, Charles, Winskill, Peter, Dorigatti, Ilaria, Walker, Patrick G. T., Riley, Steven, Schnekenberg, Ricardo P., Hoeltgebaum, Henrique, Mellan, Thomas A., Mishra, Swapnil, Unwin, H. Juliette T., Watson, Oliver J., Cucunubá, Zulma M., Baguelin, Marc, Whittles, Lilith, Bhatt, Samir, Ghani, Azra C., Ferguson, Neil M., Okell, Lucy C.
Publicado 2022

Anonymised and aggregated crowd level mobility data from mobile phones suggests that initial compliance with COVID-19 social distancing interventions was high and geographically co...

por Jeffrey, Benjamin, Walters, Caroline E., Ainslie, Kylie E. C., Eales, Oliver, Ciavarella, Constanze, Bhatia, Sangeeta, Hayes, Sarah, Baguelin, Marc, Boonyasiri, Adhiratha, Brazeau, Nicholas F., Cuomo-Dannenburg, Gina, FitzJohn, Richard G., Gaythorpe, Katy, Green, William, Imai, Natsuko, Mellan, Thomas A., Mishra, Swapnil, Nouvellet, Pierre, Unwin, H. Juliette T., Verity, Robert, Vollmer, Michaela, Whittaker, Charles, Ferguson, Neil M., Donnelly, Christl A., Riley, Steven
Publicado 2020

Changing composition of SARS-CoV-2 lineages and rise of Delta variant in England

por Mishra, Swapnil, Mindermann, Sören, Sharma, Mrinank, Whittaker, Charles, Mellan, Thomas A, Wilton, Thomas, Klapsa, Dimitra, Mate, Ryan, Fritzsche, Martin, Zambon, Maria, Ahuja, Janvi, Howes, Adam, Miscouridou, Xenia, Nason, Guy P, Ratmann, Oliver, Semenova, Elizaveta, Leech, Gavin, Sandkühler, Julia Fabienne, Rogers-Smith, Charlie, Vollmer, Michaela, Unwin, H Juliette T, Gal, Yarin, Chand, Meera, Gandy, Axel, Martin, Javier, Volz, Erik, Ferguson, Neil M, Bhatt, Samir, Brauner, Jan M, Flaxman, Seth
Publicado 2021

State-level tracking of COVID-19 in the United States

por Unwin, H. Juliette T., Mishra, Swapnil, Bradley, Valerie C., Gandy, Axel, Mellan, Thomas A., Coupland, Helen, Ish-Horowicz, Jonathan, Vollmer, Michaela A. C., Whittaker, Charles, Filippi, Sarah L., Xi, Xiaoyue, Monod, Mélodie, Ratmann, Oliver, Hutchinson, Michael, Valka, Fabian, Zhu, Harrison, Hawryluk, Iwona, Milton, Philip, Ainslie, Kylie E. C., Baguelin, Marc, Boonyasiri, Adhiratha, Brazeau, Nick F., Cattarino, Lorenzo, Cucunuba, Zulma, Cuomo-Dannenburg, Gina, Dorigatti, Ilaria, Eales, Oliver D., Eaton, Jeffrey W., van Elsland, Sabine L., FitzJohn, Richard G., Gaythorpe, Katy A. M., Green, William, Hinsley, Wes, Jeffrey, Benjamin, Knock, Edward, Laydon, Daniel J., Lees, John, Nedjati-Gilani, Gemma, Nouvellet, Pierre, Okell, Lucy, Parag, Kris V., Siveroni, Igor, Thompson, Hayley A., Walker, Patrick, Walters, Caroline E., Watson, Oliver J., Whittles, Lilith K., Ghani, Azra C., Ferguson, Neil M., Riley, Steven, Donnelly, Christl A., Bhatt, Samir, Flaxman, Seth
Publicado 2020

Reduction in mobility and COVID-19 transmission

por Nouvellet, Pierre, Bhatia, Sangeeta, Cori, Anne, Ainslie, Kylie E. C., Baguelin, Marc, Bhatt, Samir, Boonyasiri, Adhiratha, Brazeau, Nicholas F., Cattarino, Lorenzo, Cooper, Laura V., Coupland, Helen, Cucunuba, Zulma M., Cuomo-Dannenburg, Gina, Dighe, Amy, Djaafara, Bimandra A., Dorigatti, Ilaria, Eales, Oliver D., van Elsland, Sabine L., Nascimento, Fabricia F., FitzJohn, Richard G., Gaythorpe, Katy A. M., Geidelberg, Lily, Green, William D., Hamlet, Arran, Hauck, Katharina, Hinsley, Wes, Imai, Natsuko, Jeffrey, Benjamin, Knock, Edward, Laydon, Daniel J., Lees, John A., Mangal, Tara, Mellan, Thomas A., Nedjati-Gilani, Gemma, Parag, Kris V., Pons-Salort, Margarita, Ragonnet-Cronin, Manon, Riley, Steven, Unwin, H. Juliette T., Verity, Robert, Vollmer, Michaela A. C., Volz, Erik, Walker, Patrick G. T., Walters, Caroline E., Wang, Haowei, Watson, Oliver J., Whittaker, Charles, Whittles, Lilith K., Xi, Xiaoyue, Ferguson, Neil M., Donnelly, Christl A.
Publicado 2021

Potential impact of the COVID-19 pandemic on HIV, tuberculosis, and malaria in low-income and middle-income countries: a modelling study

por Hogan, Alexandra B, Jewell, Britta L, Sherrard-Smith, Ellie, Vesga, Juan F, Watson, Oliver J, Whittaker, Charles, Hamlet, Arran, Smith, Jennifer A, Winskill, Peter, Verity, Robert, Baguelin, Marc, Lees, John A, Whittles, Lilith K, Ainslie, Kylie E C, Bhatt, Samir, Boonyasiri, Adhiratha, Brazeau, Nicholas F, Cattarino, Lorenzo, Cooper, Laura V, Coupland, Helen, Cuomo-Dannenburg, Gina, Dighe, Amy, Djaafara, Bimandra A, Donnelly, Christl A, Eaton, Jeff W, van Elsland, Sabine L, FitzJohn, Richard G, Fu, Han, Gaythorpe, Katy A M, Green, William, Haw, David J, Hayes, Sarah, Hinsley, Wes, Imai, Natsuko, Laydon, Daniel J, Mangal, Tara D, Mellan, Thomas A, Mishra, Swapnil, Nedjati-Gilani, Gemma, Parag, Kris V, Thompson, Hayley A, Unwin, H Juliette T, Vollmer, Michaela A C, Walters, Caroline E, Wang, Haowei, Wang, Yuanrong, Xi, Xiaoyue, Ferguson, Neil M, Okell, Lucy C, Churcher, Thomas S, Arinaminpathy, Nimalan, Ghani, Azra C, Walker, Patrick G T, Hallett, Timothy B
Publicado 2020

Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India

por Dhar, Mahesh S., Marwal, Robin, VS, Radhakrishnan, Ponnusamy, Kalaiarasan, Jolly, Bani, Bhoyar, Rahul C., Sardana, Viren, Naushin, Salwa, Rophina, Mercy, Mellan, Thomas A., Mishra, Swapnil, Whittaker, Charles, Fatihi, Saman, Datta, Meena, Singh, Priyanka, Sharma, Uma, Ujjainiya, Rajat, Bhatheja, Nitin, Divakar, Mohit Kumar, Singh, Manoj K., Imran, Mohamed, Senthivel, Vigneshwar, Maurya, Ranjeet, Jha, Neha, Mehta, Priyanka, A, Vivekanand, Sharma, Pooja, VR, Arvinden, Chaudhary, Urmila, Soni, Namita, Thukral, Lipi, Flaxman, Seth, Bhatt, Samir, Pandey, Rajesh, Dash, Debasis, Faruq, Mohammed, Lall, Hemlata, Gogia, Hema, Madan, Preeti, Kulkarni, Sanket, Chauhan, Himanshu, Sengupta, Shantanu, Kabra, Sandhya, Gupta, Ravindra K., Singh, Sujeet K., Agrawal, Anurag, Rakshit, Partha, Nandicoori, Vinay, Tallapaka, Karthik Bharadwaj, Sowpati, Divya Tej, Thangaraj, K., Bashyam, Murali Dharan, Dalal, Ashwin, Sivasubbu, Sridhar, Scaria, Vinod, Parida, Ajay, Raghav, Sunil K., Prasad, Punit, Sarin, Apurva, Mayor, Satyajit, Ramakrishnan, Uma, Palakodeti, Dasaradhi, Seshasayee, Aswin Sai Narain, Bhat, Manoj, Shouche, Yogesh, Pillai, Ajay, Dikid, Tanzin, Das, Saumitra, Maitra, Arindam, Chinnaswamy, Sreedhar, Biswas, Nidhan Kumar, Desai, Anita Sudhir, Pattabiraman, Chitra, Manjunatha, M. V., Mani, Reeta S., Arunachal Udupi, Gautam, Abraham, Priya, Atul, Potdar Varsha, Cherian, Sarah S.
Publicado 2021

Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil

por Faria, Nuno R., Mellan, Thomas A., Whittaker, Charles, Claro, Ingra M., Candido, Darlan da S., Mishra, Swapnil, Crispim, Myuki A. E., Sales, Flavia C., Hawryluk, Iwona, McCrone, John T., Hulswit, Ruben J. G., Franco, Lucas A. M., Ramundo, Mariana S., de Jesus, Jaqueline G., Andrade, Pamela S., Coletti, Thais M., Ferreira, Giulia M., Silva, Camila A. M., Manuli, Erika R., Pereira, Rafael H. M., Peixoto, Pedro S., Kraemer, Moritz U., Gaburo, Nelson, Camilo, Cecilia da C., Hoeltgebaum, Henrique, Souza, William M., Rocha, Esmenia C., de Souza, Leandro M., de Pinho, Mariana C., Araujo, Leonardo J. T, Malta, Frederico S. V., de Lima, Aline B., Silva, Joice do P., Zauli, Danielle A. G., de S. Ferreira, Alessandro C., Schnekenberg, Ricardo P, Laydon, Daniel J., Walker, Patrick G. T., Schlüter, Hannah M., dos Santos, Ana L. P., Vidal, Maria S., Del Caro, Valentina S., Filho, Rosinaldo M. F., dos Santos, Helem M., Aguiar, Renato S., Modena, José L. P., Nelson, Bruce, Hay, James A., Monod, Melodie, Miscouridou, Xenia, Coupland, Helen, Sonabend, Raphael, Vollmer, Michaela, Gandy, Axel, Suchard, Marc A., Bowden, Thomas A., Pond, Sergei L. K., Wu, Chieh-Hsi, Ratmann, Oliver, Ferguson, Neil M., Dye, Christopher, Loman, Nick J., Lemey, Philippe, Rambaut, Andrew, Fraiji, Nelson A., Carvalho, Maria do P. S. S., Pybus, Oliver G., Flaxman, Seth, Bhatt, Samir, Sabino, Ester C.
Publicado 2021

Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

por Faria, Nuno R., Mellan, Thomas A., Whittaker, Charles, Claro, Ingra M., Candido, Darlan da S., Mishra, Swapnil, Crispim, Myuki A. E., Sales, Flavia C. S., Hawryluk, Iwona, McCrone, John T., Hulswit, Ruben J. G., Franco, Lucas A. M., Ramundo, Mariana S., de Jesus, Jaqueline G., Andrade, Pamela S., Coletti, Thais M., Ferreira, Giulia M., Silva, Camila A. M., Manuli, Erika R., Pereira, Rafael H. M., Peixoto, Pedro S., Kraemer, Moritz U. G., Gaburo, Nelson, Camilo, Cecilia da C., Hoeltgebaum, Henrique, Souza, William M., Rocha, Esmenia C., de Souza, Leandro M., de Pinho, Mariana C., Araujo, Leonardo J. T., Malta, Frederico S. V., de Lima, Aline B., Silva, Joice do P., Zauli, Danielle A. G., Ferreira, Alessandro C. de S., Schnekenberg, Ricardo P., Laydon, Daniel J., Walker, Patrick G. T., Schlter, Hannah M., dos Santos, Ana L. P., Vidal, Maria S., Del Caro, Valentina S., Filho, Rosinaldo M. F., dos Santos, Helem M., Aguiar, Renato S., Proena-Modena, Jos L., Nelson, Bruce, Hay, James A., Monod, Mlodie, Miscouridou, Xenia, Coupland, Helen, Sonabend, Raphael, Vollmer, Michaela, Gandy, Axel, Prete, Carlos A., Nascimento, Vitor H., Suchard, Marc A., Bowden, Thomas A., Pond, Sergei L. K., Wu, Chieh-Hsi, Ratmann, Oliver, Ferguson, Neil M., Dye, Christopher, Loman, Nick J., Lemey, Philippe, Rambaut, Andrew, Fraiji, Nelson A., Carvalho, Maria do P. S. S., Pybus, Oliver G., Flaxman, Seth, Bhatt, Samir, Sabino, Ester C.
Publicado 2021

Evolution and epidemic spread of SARS-CoV-2 in Brazil

por Candido, Darlan S., Claro, Ingra M., de Jesus, Jaqueline G., Souza, William M., Moreira, Filipe R. R., Dellicour, Simon, Mellan, Thomas A., du Plessis, Louis, Pereira, Rafael H. M., Sales, Flavia C. S., Manuli, Erika R., Thézé, Julien, Almeida, Luiz, Menezes, Mariane T., Voloch, Carolina M., Fumagalli, Marcilio J., Coletti, Thaís M., da Silva, Camila A. M., Ramundo, Mariana S., Amorim, Mariene R., Hoeltgebaum, Henrique H., Mishra, Swapnil, Gill, Mandev S., Carvalho, Luiz M., Buss, Lewis F., Prete, Carlos A., Ashworth, Jordan, Nakaya, Helder I., Peixoto, Pedro S., Brady, Oliver J., Nicholls, Samuel M., Tanuri, Amilcar, Rossi, Átila D., Braga, Carlos K.V., Gerber, Alexandra L., de C. Guimarães, Ana Paula, Gaburo, Nelson, Alencar, Cecila Salete, Ferreira, Alessandro C.S., Lima, Cristiano X., Levi, José Eduardo, Granato, Celso, Ferreira, Giulia M., Francisco, Ronaldo S., Granja, Fabiana, Garcia, Marcia T., Moretti, Maria Luiza, Perroud, Mauricio W., Castiñeiras, Terezinha M. P. P., Lazari, Carolina S., Hill, Sarah C., de Souza Santos, Andreza Aruska, Simeoni, Camila L., Forato, Julia, Sposito, Andrei C., Schreiber, Angelica Z., Santos, Magnun N. N., de Sá, Camila Zolini, Souza, Renan P., Resende-Moreira, Luciana C., Teixeira, Mauro M., Hubner, Josy, Leme, Patricia A. F., Moreira, Rennan G, Nogueira, Maurício L., Ferguson, Neil M, Costa, Silvia F., Proenca-Modena, José Luiz, Vasconcelos, Ana Tereza R., Bhatt, Samir, Lemey, Philippe, Wu, Chieh-Hsi, Rambaut, Andrew, Loman, Nick J., Aguiar, Renato S., Pybus, Oliver G., Sabino, Ester C., Faria, Nuno Rodrigues
Publicado 2020