Truvari: refined structural variant comparison preserves allelic diversity

por English, Adam C., Menon, Vipin K., Gibbs, Richard A., Metcalf, Ginger A., Sedlazeck, Fritz J.
Publicado 2022

Comparison of Age-Stratified Seroprevalence of Antibodies against Norovirus GII in India and the United Kingdom

por Menon, Vipin Kumar, George, Santosh, Aladin, Farah, Nawaz, Sameena, Sarkar, Rajiv, Lopman, Ben, Gray, James J., Gomara, Miren Iturriza, Kang, Gagandeep
Publicado 2013

Generation of a mouse model of T-cell lymphoma based on chronic LPS challenge and TGF-β signaling disruption

por Muñoz, Nina M., Katz, Lior H., Shina, Ji-Hyun, Gi, Young Jin, Menon, Vipin Kumar, Gagea, Mihai, Rashid, Asif, Chen, Jian, Mishra, Lopa
Publicado 2014

Primary Infection May Be an Underlying Factor Contributing to Lethal Hemorrhagic Disease Caused by Elephant Endotheliotropic Herpesvirus 3 in African Elephants (Loxodonta africana)

por Pursell, Taylor, Spencer Clinton, Jennifer L., Tan, Jie, Peng, Rongsheng, Qin, Xiang, Doddapaneni, Harshavardhan, Menon, Vipin, Momin, Zeineen, Kottapalli, Kavya, Howard, Lauren, Latimer, Erin, Heaggans, Sarah, Hayward, Gary S., Ling, Paul D.
Publicado 2021

Transmission event of SARS-CoV-2 Delta variant reveals multiple vaccine breakthrough infections

por Farinholt, Timothy, Doddapaneni, Harsha, Qin, Xiang, Menon, Vipin, Meng, Qingchang, Metcalf, Ginger, Chao, Hsu, Gingras, Marie-Claude, Farinholt, Paige, Agrawal, Charu, Muzny, Donna M., Piedra, Pedro A., Gibbs, Richard A., Petrosino, Joseph
Publicado 2021

Norovirus Gastroenteritis in a Birth Cohort in Southern India

por Menon, Vipin Kumar, George, Santosh, Sarkar, Rajiv, Giri, Sidhartha, Samuel, Prasanna, Vivek, Rosario, Saravanabavan, Anuradha, Liakath, Farzana Begum, Ramani, Sasirekha, Iturriza-Gomara, Miren, Gray, James J., Brown, David W., Estes, Mary K., Kang, Gagandeep
Publicado 2016

Transmission event of SARS-CoV-2 delta variant reveals multiple vaccine breakthrough infections

por Farinholt, Timothy, Doddapaneni, Harsha, Qin, Xiang, Menon, Vipin, Meng, Qingchang, Metcalf, Ginger, Chao, Hsu, Gingras, Marie-Claude, Avadhanula, Vasanthi, Farinholt, Paige, Agrawal, Charu, Muzny, Donna M., Piedra, Pedro A., Gibbs, Richard A., Petrosino, Joseph
Publicado 2021

Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load

por Avadhanula, Vasanthi, Creighton, Chad, Ferlic-Stark, Laura, Sucgang, Richard, Zhang, Yiqun, Nagaraj, Divya, Nicholson, Erin, Rajan, Anubama, Menon, Vipin, Doddapaneni, Harshavardhan, Muzny, Donna, Metcalf, Ginger, Cregeen, Sara Javornik, Hoffman, Kristi, Gibbs, Richard, Petrosino, Joseph, Piedra, Pedro
Publicado 2023

Modeling nonsegmented negative-strand RNA virus (NNSV) transcription with ejective polymerase collisions and biased diffusion

por Piedra, Felipe-Andrés, Henke, David, Rajan, Anubama, Muzny, Donna M., Doddapaneni, Harsha, Menon, Vipin K., Hoffman, Kristi L., Ross, Matthew C., Javornik Cregeen, Sara J., Metcalf, Ginger, Gibbs, Richard A., Petrosino, Joseph F., Avadhanula, Vasanthi, Piedra, Pedro A.
Publicado 2023

Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load

por Avadhanula, Vasanthi, Creighton, Chad J., Ferlic-Stark, Laura, Sucgang, Richard, Zhang, Yiqun, Nagaraj, Divya, Nicholson, Erin G., Rajan, Anubama, Menon, Vipin Kumar, Doddapaneni, Harshavardhan, Muzny, Donna Marie, Metcalf, Ginger, Cregeen, Sara Joan Javornik, Hoffman, Kristi Louise, Gibbs, Richard A, Petrosino, Joseph, Piedra, Pedro A
Publicado 2023

Multiple Respiratory Syncytial Virus (RSV) Strains Infecting HEp-2 and A549 Cells Reveal Cell Line-Dependent Differences in Resistance to RSV Infection

por Rajan, Anubama, Piedra, Felipe-Andrés, Aideyan, Letisha, McBride, Trevor, Robertson, Matthew, Johnson, Hannah L., Aloisio, Gina Marie, Henke, David, Coarfa, Cristian, Stossi, Fabio, Menon, Vipin Kumar, Doddapaneni, Harshavardhan, Muzny, Donna Marie, Javornik Cregeen, Sara Joan, Hoffman, Kristi Louise, Petrosino, Joseph, Gibbs, Richard A., Avadhanula, Vasanthi, Piedra, Pedro A.
Publicado 2022

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

por Doddapaneni, Harsha, Cregeen, Sara Javornik, Sucgang, Richard, Meng, Qingchang, Qin, Xiang, Avadhanula, Vasanthi, Chao, Hsu, Menon, Vipin, Nicholson, Erin, Henke, David, Piedra, Felipe-Andres, Rajan, Anubama, Momin, Zeineen, Kottapalli, Kavya, Hoffman, Kristi L., Sedlazeck, Fritz J., Metcalf, Ginger, Piedra, Pedro A., Muzny, Donna M., Petrosino, Joseph F., Gibbs, Richard A.
Publicado 2020

Oligonucleotide Capture Sequencing of the SARS-CoV-2 Genome and Subgenomic Fragments from COVID-19 Individuals

por Doddapaneni, Harsha, Cregeen, Sara Javornik, Sucgang, Richard, Meng, Qingchang, Qin, Xiang, Avadhanula, Vasanthi, Chao, Hsu, Menon, Vipin, Nicholson, Erin, Henke, David, Piedra, Felipe-Andres, Rajan, Anubama, Momin, Zeineen, Kottapalli, Kavya, Hoffman, Kristi L., Sedlazeck, Fritz J., Metcalf, Ginger, Piedra, Pedro A., Muzny, Donna M., Petrosino, Joseph F., Gibbs, Richard A.
Publicado 2020

Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals

por Doddapaneni, Harsha, Cregeen, Sara Javornik, Sucgang, Richard, Meng, Qingchang, Qin, Xiang, Avadhanula, Vasanthi, Chao, Hsu, Menon, Vipin, Nicholson, Erin, Henke, David, Piedra, Felipe-Andres, Rajan, Anubama, Momin, Zeineen, Kottapalli, Kavya, Hoffman, Kristi L., Sedlazeck, Fritz J., Metcalf, Ginger, Piedra, Pedro A., Muzny, Donna M., Petrosino, Joseph F., Gibbs, Richard A.
Publicado 2021

Fully resolved assembly of Cryptosporidium parvum

por Menon, Vipin K, Okhuysen, Pablo C, Chappell, Cynthia L, Mahmoud, Medhat, Mahmoud, Medhat, Meng, Qingchang, Doddapaneni, Harsha, Vee, Vanesa, Han, Yi, Salvi, Sejal, Bhamidipati, Sravya, Kottapalli, Kavya, Weissenberger, George, Shen, Hua, Ross, Matthew C, Hoffman, Kristi L, Cregeen, Sara Javornik, Muzny, Donna M, Metcalf, Ginger A, Gibbs, Richard A, Petrosino, Joseph F, Sedlazeck, Fritz J
Publicado 2022

Mutational Profiles Reveal an Aberrant TGF-β-CEA Regulated Pathway in Colon Adenomas

por Chen, Jian, Raju, Gottumukkala S., Jogunoori, Wilma, Menon, Vipin, Majumdar, Avijit, Chen, Jiun-Sheng, Gi, Young Jin, Jeong, Yun Seong, Phan, Liem, Belkin, Mitchell, Gu, Shoujun, Kundra, Suchin, Mistry, Nipun A., Zhang, Jianping, Su, Xiaoping, Li, Shulin, Lin, Sue-Hwa, Javle, Milind, McMurray, John S., Rahlfs, Thomas F., Mishra, Bibhuti, White, Jon, Rashid, Asif, Beauchemin, Nicole, Weston, Brian R., Shafi, Mehnaz A., Stroehlein, John R., Davila, Marta, Akbani, Rehan, Weinstein, John N., Wu, Xifeng, Mishra, Lopa
Publicado 2016

Structural variation across 138,134 samples in the TOPMed consortium

por Jun, Goo, English, Adam C, Metcalf, Ginger A, Yang, Jianzhi, Chaisson, Mark JP, Pankratz, Nathan, Menon, Vipin K, Salerno, William J, Krasheninina, Olga, Smith, Albert V, Lane, John A, Blackwell, Tom, Kang, Hyun Min, Salvi, Sejal, Meng, Qingchang, Shen, Hua, Pasham, Divya, Bhamidipati, Sravya, Kottapalli, Kavya, Arnett, Donna K., Ashley-Koch, Allison, Auer, Paul L., Beutel, Kathleen M, Bis, Joshua C., Blangero, John, Bowden, Donald W., Brody, Jennifer A., Cade, Brian E., Chen, Yii-Der Ida, Cho, Michael H., Curran, Joanne E., Fornage, Myriam, Freedman, Barry I., Fingerlin, Tasha, Gelb, Bruce D., Hou, Lifang, Hung, Yi-Jen, Kane, John P, Kaplan, Robert, Kim, Wonji, Loos, Ruth J.F., Marcus, Gregory M, Mathias, Rasika A., McGarvey, Stephen T., Montgomery, Courtney, Naseri, Take, Nouraie, S. Mehdi, Preuss, Michael H., Palmer, Nicholette D., Peyser, Patricia A., Raffield, Laura M., Ratan, Aakrosh, Redline, Susan, Reupena, Sefuiva, Rotter, Jerome I., Rich, Stephen S., Rienstra, Michiel, Ruczinski, Ingo, Sankaran, Vijay G., Schwartz, David A., Seidman, Christine E., Seidman, Jonathan G., Silverman, Edwin K., Smith, Jennifer A., Stilp, Adrienne, Taylor, Kent D., Telen, Marilyn J., Weiss, Scott T., Williams, L. Keoki, Wu, Baojun, Yanek, Lisa R., Zhang, Yingze, Lasky-Su, Jessica, Gingras, Marie Claude, Dutcher, Susan K., Eichler, Evan E., Gabriel, Stacey, Germer, Soren, Kim, Ryan, Viaud-Martinez, Karine A., Nickerson, Deborah A., Luo, James, Reiner, Alex, Gibbs, Richard A, Boerwinkle, Eric, Abecasis, Goncalo, Sedlazeck, Fritz J
Publicado 2023

Structural variation across 138,134 samples in the TOPMed consortium

por Jun, Goo, English, Adam C, Metcalf, Ginger A, Yang, Jianzhi, Chaisson, Mark JP, Pankratz, Nathan, Menon, Vipin K, Salerno, William J, Krasheninina, Olga, Smith, Albert V, Lane, John A, Blackwell, Tom, Kang, Hyun Min, Salvi, Sejal, Meng, Qingchang, Shen, Hua, Pasham, Divya, Bhamidipati, Sravya, Kottapalli, Kavya, Arnett, Donna K., Ashley-Koch, Allison, Auer, Paul L., Beutel, Kathleen M, Bis, Joshua C., Blangero, John, Bowden, Donald W., Brody, Jennifer A., Cade, Brian E., Chen, Yii-Der Ida, Cho, Michael H., Curran, Joanne E., Fornage, Myriam, Freedman, Barry I., Fingerlin, Tasha, Gelb, Bruce D., Hou, Lifang, Hung, Yi-Jen, Kane, John P, Kaplan, Robert, Kim, Wonji, Loos, Ruth J.F., Marcus, Gregory M, Mathias, Rasika A., McGarvey, Stephen T., Montgomery, Courtney, Naseri, Take, Nouraie, S. Mehdi, Preuss, Michael H., Palmer, Nicholette D., Peyser, Patricia A., Raffield, Laura M., Ratan, Aakrosh, Redline, Susan, Reupena, Sefuiva, Rotter, Jerome I., Rich, Stephen S., Rienstra, Michiel, Ruczinski, Ingo, Sankaran, Vijay G., Schwartz, David A., Seidman, Christine E., Seidman, Jonathan G., Silverman, Edwin K., Smith, Jennifer A., Stilp, Adrienne, Taylor, Kent D., Telen, Marilyn J., Weiss, Scott T., Williams, L. Keoki, Wu, Baojun, Yanek, Lisa R., Zhang, Yingze, Lasky-Su, Jessica, Gingras, Marie Claude, Dutcher, Susan K., Eichler, Evan E., Gabriel, Stacey, Germer, Soren, Kim, Ryan, Viaud-Martinez, Karine A., Nickerson, Deborah A., Luo, James, Reiner, Alex, Gibbs, Richard A, Boerwinkle, Eric, Abecasis, Goncalo, Sedlazeck, Fritz J
Publicado 2023