Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale

por Michel, Audrey M, Baranov, Pavel V
Publicado 2013

PausePred and Rfeet: webtools for inferring ribosome pauses and visualizing footprint density from ribosome profiling data

por Kumari, Romika, Michel, Audrey M., Baranov, Pavel V.
Publicado 2018

Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning

por Michel, Audrey M, Andreev, Dmitry E, Baranov, Pavel V
Publicado 2014

Hepatitis C Virus Downregulates Core Subunits of Oxidative Phosphorylation, Reminiscent of the Warburg Effect in Cancer Cells

por Gerresheim, Gesche K., Roeb, Elke, Michel, Audrey M., Niepmann, Michael
Publicado 2019

GWIPS‐viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms

por Michel, Audrey M., Ahern, Anna M., Donohue, Claire A., Baranov, Pavel V.
Publicado 2015

Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data

por Kiniry, Stephen J, Judge, Ciara E, Michel, Audrey M, Baranov, Pavel V
Publicado 2021

Trips-Viz: a transcriptome browser for exploring Ribo-Seq data

por Kiniry, Stephen J, O’Connor, Patrick B F, Michel, Audrey M, Baranov, Pavel V
Publicado 2019

Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences

por Ivanov, Ivaylo P., Firth, Andrew E., Michel, Audrey M., Atkins, John F., Baranov, Pavel V.
Publicado 2011

Observation of dually decoded regions of the human genome using ribosome profiling data

por Michel, Audrey M., Choudhury, Kingshuk Roy, Firth, Andrew E., Ingolia, Nicholas T., Atkins, John F., Baranov, Pavel V.
Publicado 2012

GWIPS-viz: 2018 update

por Michel, Audrey M, Kiniry, Stephen J, O’Connor, Patrick B F, Mullan, James P, Baranov, Pavel V
Publicado 2018

TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress response

por Andreev, Dmitry E, Arnold, Maxim, Kiniry, Stephen J, Loughran, Gary, Michel, Audrey M, Rachinskii, Dmitrii, Baranov, Pavel V
Publicado 2018

RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data

por Michel, Audrey M., Mullan, James P. A., Velayudhan, Vimalkumar, O'Connor, Patrick B. F., Donohue, Claire A., Baranov, Pavel V.
Publicado 2016

GWIPS-viz: development of a ribo-seq genome browser

por Michel, Audrey M., Fox, Gearoid, M. Kiran, Anmol, De Bo, Christof, O’Connor, Patrick B. F., Heaphy, Stephen M., Mullan, James P. A., Donohue, Claire A., Higgins, Desmond G., Baranov, Pavel V.
Publicado 2014

Translation Initiation from Conserved Non-AUG Codons Provides Additional Layers of Regulation and Coding Capacity

por Ivanov, Ivaylo P., Wei, Jiajie, Caster, Stephen Z., Smith, Kristina M., Michel, Audrey M., Zhang, Ying, Firth, Andrew E., Freitag, Michael, Dunlap, Jay C., Bell-Pedersen, Deborah, Atkins, John F., Sachs, Matthew S.
Publicado 2017

Cellular Gene Expression during Hepatitis C Virus Replication as Revealed by Ribosome Profiling

por Gerresheim, Gesche K., Bathke, Jochen, Michel, Audrey M., Andreev, Dmitri E., Shalamova, Lyudmila A., Rossbach, Oliver, Hu, Pan, Glebe, Dieter, Fricke, Markus, Marz, Manja, Goesmann, Alexander, Kiniry, Stephen J., Baranov, Pavel V., Shatsky, Ivan N., Niepmann, Michael
Publicado 2019