Centromeric Satellite DNAs: Hidden Sequence Variation in the Human Population

por Miga, Karen H.
Publicado 2019

Variation and Evolution of Human Centromeres: A Field Guide and Perspective

por Miga, Karen H., Alexandrov, Ivan A.
Publicado 2021

Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false positive alignments

por Miga, Karen H., Eisenhart, Christopher, Kent, W. James
Publicado 2015

Genomic Characterization of Large Heterochromatic Gaps in the Human Genome Assembly

por Altemose, Nicolas, Miga, Karen H., Maggioni, Mauro, Willard, Huntington F.
Publicado 2014

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing

por Sevim, Volkan, Bashir, Ali, Chin, Chen-Shan, Miga, Karen H.
Publicado 2016

Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA

por Langley, Sasha A, Miga, Karen H, Karpen, Gary H, Langley, Charles H
Publicado 2019

TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats

por Mikheenko, Alla, Bzikadze, Andrey V, Gurevich, Alexey, Miga, Karen H, Pevzner, Pavel A
Publicado 2020

Improved data analysis for the MinION nanopore sequencer

por Jain, Miten, Fiddes, Ian, Miga, Karen H., Olsen, Hugh E., Paten, Benedict, Akeson, Mark
Publicado 2015

Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes

por Aguilar, Robin, Camplisson, Conor K., Lin, Qiaoyi, Miga, Karen H., Noble, William S., Beliveau, Brian J.
Publicado 2023

Centromere reference models for human chromosomes X and Y satellite arrays

por Miga, Karen H., Newton, Yulia, Jain, Miten, Altemose, Nicolas, Willard, Huntington F., Kent, W. James
Publicado 2014

Human Artificial Chromosomes that Bypass Centromeric DNA

por Logsdon, Glennis A., Gambogi, Craig W., Liskovykh, Mikhail A., Barrey, Evelyne J., Larionov, Vladimir, Miga, Karen H., Heun, Patrick, Black, Ben E.
Publicado 2019

Linear assembly of a human centromere on the Y chromosome

por Jain, Miten, Olsen, Hugh E, Turner, Daniel J, Stoddart, David, Bulazel, Kira V, Paten, Benedict, Haussler, David, Willard, Huntington F, Akeson, Mark, Miga, Karen H
Publicado 2018

Replication of alpha-satellite DNA arrays in endogenous human centromeric regions and in human artificial chromosome

por Erliandri, Indri, Fu, Haiqing, Nakano, Megumi, Kim, Jung-Hyun, Miga, Karen H., Liskovykh, Mikhail, Earnshaw, William C., Masumoto, Hiroshi, Kouprina, Natalay, Aladjem, Mirit I., Larionov, Vladimir
Publicado 2014

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

por Nurk, Sergey, Walenz, Brian P., Rhie, Arang, Vollger, Mitchell R., Logsdon, Glennis A., Grothe, Robert, Miga, Karen H., Eichler, Evan E., Phillippy, Adam M., Koren, Sergey
Publicado 2020

DiMeLo-seq: a long-read, single-molecule method for mapping protein-DNA interactions genome-wide

por Altemose, Nicolas, Maslan, Annie, Smith, Owen K., Sundararajan, Kousik, Brown, Rachel R., Mishra, Reet, Detweiler, Angela M., Neff, Norma, Miga, Karen H., Straight, Aaron F., Streets, Aaron
Publicado 2022

Local read haplotagging enables accurate long-read small variant calling

por Kolesnikov, Alexey, Cook, Daniel, Nattestad, Maria, McNulty, Brandy, Gorzynski, John, Goenka, Sneha, Ashley, Euan A., Jain, Miten, Miga, Karen H., Paten, Benedict, Chang, Pi-Chuan, Carroll, Andrew, Shafin, Kishwar
Publicado 2023

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

por Shafin, Kishwar, Pesout, Trevor, Chang, Pi-Chuan, Nattestad, Maria, Kolesnikov, Alexey, Goel, Sidharth, Baid, Gunjan, Kolmogorov, Mikhail, Eizenga, Jordan M., Miga, Karen H., Carnevali, Paolo, Jain, Miten, Carroll, Andrew, Paten, Benedict
Publicado 2021

Human centromeric CENP-A chromatin is a homotypic, octameric nucleosome at all cell cycle points

por Nechemia-Arbely, Yael, Fachinetti, Daniele, Miga, Karen H., Sekulic, Nikolina, Soni, Gautam V., Kim, Dong Hyun, Wong, Adeline K., Lee, Ah Young, Nguyen, Kristen, Dekker, Cees, Ren, Bing, Black, Ben E., Cleveland, Don W.
Publicado 2017

PCR amplicons identify widespread copy number variation in human centromeric arrays and instability in cancer

por de Lima, Leonardo Gomes, Howe, Edmund, Singh, Vijay Pratap, Potapova, Tamara, Li, Hua, Xu, Baoshan, Castle, Jemma, Crozier, Steve, Harrison, Christine J., Clifford, Steve C., Miga, Karen H., Ryan, Sarra L., Gerton, Jennifer L.
Publicado 2021

Nanopore sequencing and assembly of a human genome with ultra-long reads

por Jain, Miten, Koren, Sergey, Miga, Karen H, Quick, Josh, Rand, Arthur C, Sasani, Thomas A, Tyson, John R, Beggs, Andrew D, Dilthey, Alexander T, Fiddes, Ian T, Malla, Sunir, Marriott, Hannah, Nieto, Tom, O'Grady, Justin, Olsen, Hugh E, Pedersen, Brent S, Rhie, Arang, Richardson, Hollian, Quinlan, Aaron R, Snutch, Terrance P, Tee, Louise, Paten, Benedict, Phillippy, Adam M, Simpson, Jared T, Loman, Nicholas J, Loose, Matthew
Publicado 2018