Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains

por Miladi, Milad, Raden, Martin, Will, Sebastian, Backofen, Rolf
Publicado 2020

Integration of accessibility data from structure probing into RNA–RNA interaction prediction

por Miladi, Milad, Montaseri, Soheila, Backofen, Rolf, Raden, Martin
Publicado 2019

MutaRNA: analysis and visualization of mutation-induced changes in RNA structure

por Miladi, Milad, Raden, Martin, Diederichs, Sven, Backofen, Rolf
Publicado 2020

SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics

por Will, Sebastian, Otto, Christina, Miladi, Milad, Möhl, Mathias, Backofen, Rolf
Publicado 2015

The locality dilemma of Sankoff-like RNA alignments

por Müller, Teresa, Miladi, Milad, Hutter, Frank, Hofacker, Ivo, Will, Sebastian, Backofen, Rolf
Publicado 2020

ShaKer: RNA SHAPE prediction using graph kernel

por Mautner, Stefan, Montaseri, Soheila, Miladi, Milad, Raden, Martin, Costa, Fabrizio, Backofen, Rolf
Publicado 2019

GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering

por Miladi, Milad, Sokhoyan, Eteri, Houwaart, Torsten, Heyne, Steffen, Costa, Fabrizio, Grüning, Björn, Backofen, Rolf
Publicado 2019

RNAscClust: clustering RNA sequences using structure conservation and graph based motifs

por Miladi, Milad, Junge, Alexander, Costa, Fabrizio, Seemann, Stefan E, Havgaard, Jakob Hull, Gorodkin, Jan, Backofen, Rolf
Publicado 2017

A pan-cancer analysis of synonymous mutations

por Sharma, Yogita, Miladi, Milad, Dukare, Sandeep, Boulay, Karine, Caudron-Herger, Maiwen, Groß, Matthias, Backofen, Rolf, Diederichs, Sven
Publicado 2019

Structure-aware machine learning identifies microRNAs operating as Toll-like receptor 7/8 ligands

por Raden, Martin, Wallach, Thomas, Miladi, Milad, Zhai, Yuanyuan, Krüger, Christina, Mossmann, Zoé J., Dembny, Paul, Backofen, Rolf, Lehnardt, Seija
Publicado 2021

NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy

por de Koning, Willem, Miladi, Milad, Hiltemann, Saskia, Heikema, Astrid, Hays, John P, Flemming, Stephan, van den Beek, Marius, Mustafa, Dana A, Backofen, Rolf, Grüning, Björn, Stubbs, Andrew P
Publicado 2020

MicroRNA-100-5p and microRNA-298-5p released from apoptotic cortical neurons are endogenous Toll-like receptor 7/8 ligands that contribute to neurodegeneration

por Wallach, Thomas, Mossmann, Zoé J., Szczepek, Michal, Wetzel, Max, Machado, Rui, Raden, Martin, Miladi, Milad, Kleinau, Gunnar, Krüger, Christina, Dembny, Paul, Adler, Drew, Zhai, Yuanyuan, Kumbol, Victor, Dzaye, Omar, Schüler, Jutta, Futschik, Matthias, Backofen, Rolf, Scheerer, Patrick, Lehnardt, Seija
Publicado 2021

Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring

por Maier, Wolfgang, Bray, Simon, van den Beek, Marius, Bouvier, Dave, Coraor, Nathaniel, Miladi, Milad, Singh, Babita, De Argila, Jordi Rambla, Baker, Dannon, Roach, Nathan, Gladman, Simon, Coppens, Frederik, Martin, Darren P, Lonie, Andrew, Grüning, Björn, Kosakovsky Pond, Sergei L., Nekrutenko, Anton
Publicado 2021

Freiburg RNA tools: a central online resource for RNA-focused research and teaching

por Raden, Martin, Ali, Syed M, Alkhnbashi, Omer S, Busch, Anke, Costa, Fabrizio, Davis, Jason A, Eggenhofer, Florian, Gelhausen, Rick, Georg, Jens, Heyne, Steffen, Hiller, Michael, Kundu, Kousik, Kleinkauf, Robert, Lott, Steffen C, Mohamed, Mostafa M, Mattheis, Alexander, Miladi, Milad, Richter, Andreas S, Will, Sebastian, Wolff, Joachim, Wright, Patrick R, Backofen, Rolf
Publicado 2018