Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease

por Minot, Samuel S., Willis, Amy D.
Publicado 2019

In silico benchmarking of metagenomic tools for coding sequence detection reveals the limits of sensitivity and precision

por Golob, Jonathan Louis, Minot, Samuel Schwartz
Publicado 2020

Conservation of Gene Cassettes among Diverse Viruses of the Human Gut

por Minot, Samuel, Wu, Gary D., Lewis, James D., Bushman, Frederic D.
Publicado 2012

Complete mitochondrial genomes of the human follicle mites Demodex brevis and D. folliculorum: novel gene arrangement, truncated tRNA genes, and ancient divergence between species

por Palopoli, Michael F, Minot, Samuel, Pei, Dorothy, Satterly, Alicia, Endrizzi, Julie
Publicado 2014

RNAseq Analysis of the Parasitic Nematode Strongyloides stercoralis Reveals Divergent Regulation of Canonical Dauer Pathways

por Stoltzfus, Jonathan D., Minot, Samuel, Berriman, Matthew, Nolan, Thomas J., Lok, James B.
Publicado 2012

MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach

por Brown, Bonnie L., Watson, Mick, Minot, Samuel S., Rivera, Maria C., Franklin, Rima B.
Publicado 2017

geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response

por Minot, Samuel S., Barry, Kevin C., Kasman, Caroline, Golob, Jonathan L., Willis, Amy D.
Publicado 2021

Evolutionary and functional implications of hypervariable loci within the skin virome

por Hannigan, Geoffrey D., Zheng, Qi, Meisel, Jacquelyn S., Minot, Samuel S., Bushman, Frederick D., Grice, Elizabeth A.
Publicado 2017

MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies

por Minot, Samuel S., Garb, Bailey, Roldan, Alennie, Tang, Alice S., Oskotsky, Tomiko T., Rosenthal, Christopher, Hoffman, Noah G., Sirota, Marina, Golob, Jonathan L.
Publicado 2023

Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

por Kilianski, Andy, Haas, Jamie L, Corriveau, Elizabeth J, Liem, Alvin T, Willis, Kristen L, Kadavy, Dana R, Rosenzweig, C Nicole, Minot, Samuel S
Publicado 2015

The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome

por Hannigan, Geoffrey D., Meisel, Jacquelyn S., Tyldsley, Amanda S., Zheng, Qi, Hodkinson, Brendan P., SanMiguel, Adam J., Minot, Samuel, Bushman, Frederic D., Grice, Elizabeth A.
Publicado 2015

Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome

por Lee, Elliot M., Srinivasan, Sujatha, Purvine, Samuel O., Fiedler, Tina L., Leiser, Owen P., Proll, Sean C., Minot, Samuel S., Deatherage Kaiser, Brooke L., Fredricks, David N.
Publicado 2023

phippery: a software suite for PhIP-Seq data analysis

por Galloway, Jared G, Sung, Kevin, Minot, Samuel S, Garrett, Meghan E, Stoddard, Caitlin I, Willcox, Alexandra C, Yaffe, Zak A, Yucha, Ryan, Overbaugh, Julie, Matsen, Frederick A
Publicado 2023

Effect of the intratumoral microbiota on spatial and cellular heterogeneity in cancer

por Galeano Niño, Jorge Luis, Wu, Hanrui, LaCourse, Kaitlyn D., Kempchinsky, Andrew G., Baryiames, Alexander, Barber, Brittany, Futran, Neal, Houlton, Jeffrey, Sather, Cassie, Sicinska, Ewa, Taylor, Alison, Minot, Samuel S., Johnston, Christopher D., Bullman, Susan
Publicado 2022

Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum, a Candidate Beneficial Bacterium from the Human Microbiome

por Flores Ramos, Stephany, Brugger, Silvio D., Escapa, Isabel Fernandez, Skeete, Chelsey A., Cotton, Sean L., Eslami, Sara M., Gao, Wei, Bomar, Lindsey, Tran, Tommy H., Jones, Dakota S., Minot, Samuel, Roberts, Richard J., Johnston, Christopher D., Lemon, Katherine P.
Publicado 2021

Validation of high throughput sequencing and microbial forensics applications

por Budowle, Bruce, Connell, Nancy D, Bielecka-Oder, Anna, Colwell, Rita R, Corbett, Cindi R, Fletcher, Jacqueline, Forsman, Mats, Kadavy, Dana R, Markotic, Alemka, Morse, Stephen A, Murch, Randall S, Sajantila, Antti, Schmedes, Sarah E, Ternus, Krista L, Turner, Stephen D, Minot, Samuel
Publicado 2014

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

por McIntyre, Alexa B. R., Ounit, Rachid, Afshinnekoo, Ebrahim, Prill, Robert J., Hénaff, Elizabeth, Alexander, Noah, Minot, Samuel S., Danko, David, Foox, Jonathan, Ahsanuddin, Sofia, Tighe, Scott, Hasan, Nur A., Subramanian, Poorani, Moffat, Kelly, Levy, Shawn, Lonardi, Stefano, Greenfield, Nick, Colwell, Rita R., Rosen, Gail L., Mason, Christopher E.
Publicado 2017

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

por McIntyre, Alexa B. R., Ounit, Rachid, Afshinnekoo, Ebrahim, Prill, Robert J., Hénaff, Elizabeth, Alexander, Noah, Minot, Samuel S., Danko, David, Foox, Jonathan, Ahsanuddin, Sofia, Tighe, Scott, Hasan, Nur A., Subramanian, Poorani, Moffat, Kelly, Levy, Shawn, Lonardi, Stefano, Greenfield, Nick, Colwell, Rita R., Rosen, Gail L., Mason, Christopher E.
Publicado 2019

Human Tumor-Infiltrating MAIT Cells Display Hallmarks of Bacterial Antigen Recognition in Colorectal Cancer

por Li, Shamin, Simoni, Yannick, Becht, Etienne, Loh, Chiew Yee, Li, Naisi, Lachance, Daniel, Koo, Si-Lin, Lim, Teck Por, Tan, Emile Kwong Wei, Mathew, Ronnie, Nguyen, Andrew, Golovato, Justin, Berkson, Julia D., Prlic, Martin, Lee, Bernett, Minot, Samuel S., Nagarajan, Niranjan, Dey, Neelendu, Tan, Daniel S.W., Tan, Iain B., Newell, Evan W.
Publicado 2020

Microbiome-based risk prediction in incident heart failure: a community challenge

por Erawijantari, Pande Putu, Kartal, Ece, Liñares-Blanco, José, Laajala, Teemu D., Feldman, Lily Elizabeth, Carmona-Saez, Pedro, Shigdel, Rajesh, Claesson, Marcus Joakim, Bertelsen, Randi Jacobsen, Gomez-Cabrero, David, Minot, Samuel, Albrecht, Jacob, Chung, Verena, Inouye, Michael, Jousilahti, Pekka, Schultz, Jobst-Hendrik, Friederich, Hans-Christoph, Knight, Rob, Salomaa, Veikko, Niiranen, Teemu, Havulinna, Aki S., Saez-Rodriguez, Julio, Levinson, Rebecca T., Lahti, Leo
Publicado 2023