Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machines

por Fernández, Michael, Miranda-Saavedra, Diego
Publicado 2012

The IL-10/STAT3-mediated anti-inflammatory response: recent developments and future challenges

por Hutchins, Andrew P., Diez, Diego, Miranda-Saavedra, Diego
Publicado 2013

Systematic identification of transcriptional regulatory modules from protein–protein interaction networks

por Diez, Diego, Hutchins, Andrew Paul, Miranda-Saavedra, Diego
Publicado 2014

Genomic and computational approaches to dissect the mechanisms of STAT3’s universal and cell type-specific functions

por Hutchins, Andrew Paul, Diez, Diego, Miranda-Saavedra, Diego
Publicado 2013

Genomic analysis of LPS-stimulated myeloid cells identifies a common pro-inflammatory response but divergent IL-10 anti-inflammatory responses

por Hutchins, Andrew Paul, Takahashi, Yoshiko, Miranda-Saavedra, Diego
Publicado 2015

Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases

por Martin, David M. A., Miranda-Saavedra, Diego, Barton, Geoffrey J.
Publicado 2009

The Repertoires of Ubiquitinating and Deubiquitinating Enzymes in Eukaryotic Genomes

por Hutchins, Andrew Paul, Liu, Shaq, Diez, Diego, Miranda-Saavedra, Diego
Publicado 2013

glbase: a framework for combining, analyzing and displaying heterogeneous genomic and high-throughput sequencing data

por Hutchins, Andrew Paul, Jauch, Ralf, Dyla, Mateusz, Miranda-Saavedra, Diego
Publicado 2014

An essential Aurora-related kinase transiently associates with spindle pole bodies during Plasmodium falciparum erythrocytic schizogony

por Reininger, Luc, Wilkes, Jonathan M, Bourgade, Hélène, Miranda-Saavedra, Diego, Doerig, Christian
Publicado 2011

BloodExpress: a database of gene expression in mouse haematopoiesis

por Miranda-Saavedra, Diego, De, Subhajyoti, Trotter, Matthew W., Teichmann, Sarah A., Göttgens, Berthold
Publicado 2009

GOLD.db: genomics of lipid-associated disorders database

por Hackl, Hubert, Maurer, Michael, Mlecnik, Bernhard, Hartler, Jürgen, Stocker, Gernot, Miranda-Saavedra, Diego, Trajanoski, Zlatko
Publicado 2004

Predicting conformational ensembles and genome-wide transcription factor binding sites from DNA sequences

por Andrabi, Munazah, Hutchins, Andrew Paul, Miranda-Saavedra, Diego, Kono, Hidetoshi, Nussinov, Ruth, Mizuguchi, Kenji, Ahmad, Shandar
Publicado 2017

The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe

por Miranda-Saavedra, Diego, Stark, Michael JR, Packer, Jeremy C, Vivares, Christian P, Doerig, Christian, Barton, Geoffrey J
Publicado 2007

Deep Evolutionary Conservation of an Intramolecular Protein Kinase Activation Mechanism

por Han, Jingfen, Miranda-Saavedra, Diego, Luebbering, Nathan, Singh, Aman, Sibbet, Gary, Ferguson, Michael A. J., Cleghon, Vaughn
Publicado 2012

Distinct transcriptional regulatory modules underlie STAT3’s cell type-independent and cell type-specific functions

por Hutchins, Andrew Paul, Diez, Diego, Takahashi, Yoshiko, Ahmad, Shandar, Jauch, Ralf, Tremblay, Michel Lucien, Miranda-Saavedra, Diego
Publicado 2013

Cellular network entropy as the energy potential in Waddington's differentiation landscape

por Banerji, Christopher R. S., Miranda-Saavedra, Diego, Severini, Simone, Widschwendter, Martin, Enver, Tariq, Zhou, Joseph X., Teschendorff, Andrew E.
Publicado 2013

Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model

por Bonzanni, Nicola, Garg, Abhishek, Feenstra, K. Anton, Schütte, Judith, Kinston, Sarah, Miranda-Saavedra, Diego, Heringa, Jaap, Xenarios, Ioannis, Göttgens, Berthold
Publicado 2013

The Phosphoproteome of Bloodstream Form Trypanosoma brucei, Causative Agent of African Sleeping Sickness

por Nett, Isabelle R. E., Martin, David M. A., Miranda-Saavedra, Diego, Lamont, Douglas, Barber, Jonathan D., Mehlert, Angela, Ferguson, Michael A. J.
Publicado 2009

Chemical Proteomic Analysis Reveals the Drugability of the Kinome of Trypanosoma brucei

por Urbaniak, Michael D., Mathieson, Toby, Bantscheff, Marcus, Eberhard, Dirk, Grimaldi, Raffaella, Miranda-Saavedra, Diego, Wyatt, Paul, Ferguson, Michael A. J., Frearson, Julie, Drewes, Gerard
Publicado 2012

Population of Monocyte-Derived Macrophages

por McGovern, Naomi, Schlitzer, Andreas, Gunawan, Merry, Jardine, Laura, Shin, Amanda, Poyner, Elizabeth, Green, Kile, Dickinson, Rachel, Wang, Xiao-nong, Low, Donovan, Best, Katie, Covins, Samuel, Milne, Paul, Pagan, Sarah, Aljefri, Khadija, Windebank, Martin, Miranda-Saavedra, Diego, Larbi, Anis, Wasan, Pavandip Singh, Kaibo, Duan, Poidinger, Michael, Bigley, Venetia, Ginhoux, Florent, Collin, Matthew, Haniffa, Muzlifah
Publicado 2015