libSBOLj3: a graph-based library for design and data exchange in synthetic biology

por Mısırlı, Göksel
Publicado 2023

A Genetic Circuit Compiler: Generating Combinatorial Genetic Circuits with Web Semantics and Inference

por Waites, William, Mısırlı, Göksel, Cavaliere, Matteo, Danos, Vincent, Wipat, Anil
Publicado 2018

OMEX metadata specification (version 1.2)

por Gennari, John H., König, Matthias, Misirli, Goksel, Neal, Maxwell L., Nickerson, David P., Waltemath, Dagmar
Publicado 2021

Model annotation for synthetic biology: automating model to nucleotide sequence conversion

por Misirli, Goksel, Hallinan, Jennifer S., Yu, Tommy, Lawson, James R., Wimalaratne, Sarala M., Cooling, Michael T., Wipat, Anil
Publicado 2011

Synthetic biology open language visual (SBOL visual) version 3.0

por Baig, Hasan, Fontanarossa, Pedro, McLaughlin, James, Scott-Brown, James, Vaidyanathan, Prashant, Gorochowski, Thomas, Misirli, Goksel, Beal, Jacob, Myers, Chris
Publicado 2021

Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization

por Misirli, Goksel, Cavaliere, Matteo, Waites, William, Pocock, Matthew, Madsen, Curtis, Gilfellon, Owen, Honorato-Zimmer, Ricardo, Zuliani, Paolo, Danos, Vincent, Wipat, Anil
Publicado 2016

The Synthetic Biology Open Language (SBOL) Version 3: Simplified Data Exchange for Bioengineering

por McLaughlin, James Alastair, Beal, Jacob, Mısırlı, Göksel, Grünberg, Raik, Bartley, Bryan A., Scott-Brown, James, Vaidyanathan, Prashant, Fontanarrosa, Pedro, Oberortner, Ernst, Wipat, Anil, Gorochowski, Thomas E., Myers, Chris J.
Publicado 2020

Synthetic biology open language (SBOL) version 3.0.0

por Baig, Hasan, Fontanarrosa, Pedro, Kulkarni, Vishwesh, McLaughlin, James Alastair, Vaidyanathan, Prashant, Bartley, Bryan, Beal, Jacob, Crowther, Matthew, Gorochowski, Thomas E., Grünberg, Raik, Misirli, Goksel, Scott-Brown, James, Oberortner, Ernst, Wipat, Anil, Myers, Chris J.
Publicado 2020

Synthetic biology open language (SBOL) version 3.1.0

por Buecherl, Lukas, Mitchell, Thomas, Scott-Brown, James, Vaidyanathan, Prashant, Vidal, Gonzalo, Baig, Hasan, Bartley, Bryan, Beal, Jacob, Crowther, Matthew, Fontanarrosa, Pedro, Gorochowski, Thomas, Grünberg, Raik, Kulkarni, Vishwesh, McLaughlin, James, Mısırlı, Göksel, Oberortner, Ernst, Wipat, Anil, Myers, Chris
Publicado 2023

Synthetic Biology Open Language (SBOL) Version 2.2.0

por Cox, Robert Sidney, Madsen, Curtis, McLaughlin, James Alastair, Nguyen, Tramy, Roehner, Nicholas, Bartley, Bryan, Beal, Jacob, Bissell, Michael, Choi, Kiri, Clancy, Kevin, Grünberg, Raik, Macklin, Chris, Misirli, Goksel, Oberortner, Ernst, Pocock, Matthew, Samineni, Meher, Zhang, Michael, Zhang, Zhen, Zundel, Zach, Gennari, John H., Myers, Chris, Sauro, Herbert, Wipat, Anil
Publicado 2018

Harmonizing semantic annotations for computational models in biology

por Neal, Maxwell Lewis, König, Matthias, Nickerson, David, Mısırlı, Göksel, Kalbasi, Reza, Dräger, Andreas, Atalag, Koray, Chelliah, Vijayalakshmi, Cooling, Michael T, Cook, Daniel L, Crook, Sharon, de Alba, Miguel, Friedman, Samuel H, Garny, Alan, Gennari, John H, Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Myers, Chris, Olivier, Brett G, Sauro, Herbert M, Scharm, Martin, Snoep, Jacky L, Touré, Vasundra, Wipat, Anil, Wolkenhauer, Olaf, Waltemath, Dagmar
Publicado 2018

Synthetic Biology Open Language (SBOL) Version 2.3

por Madsen, Curtis, Goñi Moreno, Angel, P, Umesh, Palchick, Zachary, Roehner, Nicholas, Atallah, Christian, Bartley, Bryan, Choi, Kiri, Cox, Robert Sidney, Gorochowski, Thomas, Grünberg, Raik, Macklin, Chris, McLaughlin, James, Meng, Xianwei, Nguyen, Tramy, Pocock, Matthew, Samineni, Meher, Scott-Brown, James, Tarter, Ysis, Zhang, Michael, Zhang, Zhen, Zundel, Zach, Beal, Jacob, Bissell, Michael, Clancy, Kevin, Gennari, John H., Misirli, Goksel, Myers, Chris, Oberortner, Ernst, Sauro, Herbert, Wipat, Anil
Publicado 2019

Synthetic biology open language visual (SBOL visual) version 2.2

por Baig, Hasan, Fontanarrosa, Pedro, Kulkarni, Vishwesh, McLaughlin, James, Vaidyanathan, Prashant, Bartley, Bryan, Bhatia, Swapnil, Bhakta, Shyam, Bissell, Michael, Clancy, Kevin, Cox, Robert Sidney, Moreno, Angel Goñi, Gorochowski, Thomas, Grunberg, Raik, Luna, Augustin, Madsen, Curtis, Misirli, Goksel, Nguyen, Tramy, Le Novere, Nicolas, Palchick, Zachary, Pocock, Matthew, Roehner, Nicholas, Sauro, Herbert, Scott-Brown, James, Sexton, John T., Stan, Guy-Bart, Tabor, Jeffrey J., Vilar, Marta Vazquez, Voigt, Christopher A., Wipat, Anil, Zong, David, Zundel, Zach, Beal, Jacob, Myers, Chris
Publicado 2020

Synthetic biology open language visual (SBOL Visual) version 2.3

por Baig, Hasan, Fontanarossa, Pedro, Kulkarni, Vishwesh, McLaughlin, James, Vaidyanathan, Prashant, Bartley, Bryan, Bhakta, Shyam, Bhatia, Swapnil, Bissell, Mike, Clancy, Kevin, Cox, Robert Sidney, Goñi Moreno, Angel, Gorochowski, Thomas, Grunberg, Raik, Lee, Jihwan, Luna, Augustin, Madsen, Curtis, Misirli, Goksel, Nguyen, Tramy, Le Novere, Nicolas, Palchick, Zachary, Pocock, Matthew, Roehner, Nicholas, Sauro, Herbert, Scott-Brown, James, Sexton, John T., Stan, Guy-Bart, Tabor, Jeffrey J., Terry, Logan, Vazquez Vilar, Marta, Voigt, Christopher A., Wipat, Anil, Zong, David, Zundel, Zach, Beal, Jacob, Myers, Chris
Publicado 2021