Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features

por Chen, Chih-yu, Morris, Quaid, Mitchell, Jennifer A
Publicado 2012

KLF4 protein stability regulated by interaction with pluripotency transcription factors overrides transcriptional control

por Dhaliwal, Navroop K., Abatti, Luis E., Mitchell, Jennifer A.
Publicado 2019

Upstream Distal Regulatory Elements Contact the Lmo2 Promoter in Mouse Erythroid Cells

por Bhattacharya, Anandi, Chen, Chih-Yu, Ho, Sara, Mitchell, Jennifer A.
Publicado 2012

Variational infinite heterogeneous mixture model for semi-supervised clustering of heart enhancers

por Mehdi, Tahmid F, Singh, Gurdeep, Mitchell, Jennifer A, Moses, Alan M
Publicado 2019

MYB and ELF3 differentially modulate labor-inducing gene expression in myometrial cells

por Shchuka, Virlana M., Khader, Nawrah, Dorogin, Anna, Shynlova, Oksana, Mitchell, Jennifer A.
Publicado 2023

KLF4 Nuclear Export Requires ERK Activation and Initiates Exit from Naive Pluripotency

por Dhaliwal, Navroop K., Miri, Kamelia, Davidson, Scott, Tamim El Jarkass, Hala, Mitchell, Jennifer A.
Publicado 2018

Epigenetic reprogramming of a distal developmental enhancer cluster drives SOX2 overexpression in breast and lung adenocarcinoma

por Abatti, Luis E, Lado-Fernández, Patricia, Huynh, Linh, Collado, Manuel, Hoffman, Michael M, Mitchell, Jennifer A
Publicado 2023

Concordance between RNA-sequencing data and DNA microarray data in transcriptome analysis of proliferative and quiescent fibroblasts

por Trost, Brett, Moir, Catherine A., Gillespie, Zoe E., Kusalik, Anthony, Mitchell, Jennifer A., Eskiw, Christopher H.
Publicado 2015

Myc Dynamically and Preferentially Relocates to a Transcription Factory Occupied by Igh

por Osborne, Cameron S, Chakalova, Lyubomira, Mitchell, Jennifer A, Horton, Alice, Wood, Andrew L, Bolland, Daniel J, Corcoran, Anne E, Fraser, Peter
Publicado 2007

A Sox2 distal enhancer cluster regulates embryonic stem cell differentiation potential

por Zhou, Harry Y., Katsman, Yulia, Dhaliwal, Navroop K., Davidson, Scott, Macpherson, Neil N., Sakthidevi, Moorthy, Collura, Felicia, Mitchell, Jennifer A.
Publicado 2014

The pregnant myometrium is epigenetically activated at contractility-driving gene loci prior to the onset of labor in mice

por Shchuka, Virlana M., Abatti, Luis E., Hou, Huayun, Khader, Nawrah, Dorogin, Anna, Wilson, Michael D., Shynlova, Oksana, Mitchell, Jennifer A.
Publicado 2020

Intergenic Transcription, Cell-Cycle and the Developmentally Regulated Epigenetic Profile of the Human Beta-Globin Locus

por Miles, Joanne, Mitchell, Jennifer A., Chakalova, Lyubomira, Goyenechea, Beatriz, Osborne, Cameron S., O'Neill, Laura, Tanimoto, Keiji, Engel, James Douglas, Fraser, Peter
Publicado 2007

A flexible repertoire of transcription factor binding sites and a diversity threshold determines enhancer activity in embryonic stem cells

por Singh, Gurdeep, Mullany, Shanelle, Moorthy, Sakthi D., Zhang, Richard, Mehdi, Tahmid, Tian, Ruxiao, Duncan, Andrew G., Moses, Alan M., Mitchell, Jennifer A.
Publicado 2021

Nuclear RNA Sequencing of the Mouse Erythroid Cell Transcriptome

por Mitchell, Jennifer A., Clay, Ieuan, Umlauf, David, Chen, Chih-yu, Moir, Catherine A., Eskiw, Christopher H., Schoenfelder, Stefan, Chakalova, Lyubomira, Nagano, Takashi, Fraser, Peter
Publicado 2012

Chromatin Dynamics in Lineage Commitment and Cellular Reprogramming

por Shchuka, Virlana M., Malek-Gilani, Nakisa, Singh, Gurdeep, Langroudi, Lida, Dhaliwal, Navroop K., Moorthy, Sakthi D., Davidson, Scott, Macpherson, Neil N., Mitchell, Jennifer A.
Publicado 2015

Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes

por Moorthy, Sakthi D., Davidson, Scott, Shchuka, Virlana M., Singh, Gurdeep, Malek-Gilani, Nakisa, Langroudi, Lida, Martchenko, Alexandre, So, Vincent, Macpherson, Neil N., Mitchell, Jennifer A.
Publicado 2017

The recycling endosome protein Rab25 coordinates collective cell movements in the zebrafish surface epithelium

por Willoughby, Patrick Morley, Allen, Molly, Yu, Jessica, Korytnikov, Roman, Chen, Tianhui, Liu, Yupeng, So, Isis, Wan, Haoyu, Macpherson, Neil, Mitchell, Jennifer A, Fernandez-Gonzalez, Rodrigo, Bruce, Ashley EE
Publicado 2021

Correction: The recycling endosome protein Rab25 coordinates collective cell movements in the zebrafish surface epithelium

por Willoughby, Patrick Morley, Allen, Molly, Yu, Jessica, Korytnikov, Roman, Chen, Tianhui, Liu, Yupeng, So, Isis, Wan, Haoyu, Macpherson, Neil, Mitchell, Jennifer A, Fernandez-Gonzalez, Rodrigo, Bruce, Ashley EE
Publicado 2022

Competition between transcription and loop extrusion modulates promoter and enhancer dynamics

por Platania, Angeliki, Erb, Cathie, Barbieri, Mariano, Molcrette, Bastien, Grandgirard, Erwan, de Kort, Marit AC, Meaburn, Karen, Taylor, Tiegh, Shchuka, Virlana M, Kocanova, Silvia, Oliveira, Guilherme Monteiro, Mitchell, Jennifer A, Soutoglou, Evi, Lenstra, Tineke L, Molina, Nacho, Papantonis, Argyris, Bystricky, Kerstin, Sexton, Tom
Publicado 2023

Transcriptional regulation and chromatin architecture maintenance are decoupled functions at the Sox2 locus

por Taylor, Tiegh, Sikorska, Natalia, Shchuka, Virlana M., Chahar, Sanjay, Ji, Chenfan, Macpherson, Neil N., Moorthy, Sakthi D., de Kort, Marit A.C., Mullany, Shanelle, Khader, Nawrah, Gillespie, Zoe E., Langroudi, Lida, Tobias, Ian C., Lenstra, Tineke L., Mitchell, Jennifer A., Sexton, Tom
Publicado 2022