Partner-Aware Prediction of Interacting Residues in Protein-Protein Complexes from Sequence Data

por Ahmad, Shandar, Mizuguchi, Kenji
Publicado 2011

Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators

por Murakami, Yoichi, Mizuguchi, Kenji
Publicado 2014

Recent developments of sequence-based prediction of protein–protein interactions

por Murakami, Yoichi, Mizuguchi, Kenji
Publicado 2022

The Trends and Future Prospective of In Silico Models from the Viewpoint of ADME Evaluation in Drug Discovery

por Komura, Hiroshi, Watanabe, Reiko, Mizuguchi, Kenji
Publicado 2023

Prediction of Detailed Enzyme Functions and Identification of Specificity Determining Residues by Random Forests

por Nagao, Chioko, Nagano, Nozomi, Mizuguchi, Kenji
Publicado 2014

Prediction of the secondary structure of short DNA aptamers

por Afanasyeva, Arina, Nagao, Chioko, Mizuguchi, Kenji
Publicado 2019

Developing a Kinase-Specific Target Selection Method Using a Structure-Based Machine Learning Approach

por Afanasyeva, Arina, Nagao, Chioko, Mizuguchi, Kenji
Publicado 2020

TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

por Chen, Yi-An, Tripathi, Lokesh P., Mizuguchi, Kenji
Publicado 2011

An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework

por Chen, Yi-An, Tripathi, Lokesh P., Mizuguchi, Kenji
Publicado 2016

TargetMine 2022: a new vision into drug target analysis

por Chen, Yi-An, Allendes Osorio, Rodolfo S, Mizuguchi, Kenji
Publicado 2022

Prediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networks

por Andrabi, Munazah, Mizuguchi, Kenji, Sarai, Akinori, Ahmad, Shandar
Publicado 2009

CLINE: a web-tool for the comparison of biological dendrogram structures

por Allendes Osorio, Rodolfo S., Tripathi, Lokesh P., Mizuguchi, Kenji
Publicado 2019

CCRXP: exploring clusters of conserved residues in protein structures

por Ahmad, Shandar, Keskin, Ozlem, Mizuguchi, Kenji, Sarai, Akinori, Nussinov, Ruth
Publicado 2010

Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks

por Mohsen, Attayeb, Park, Jonguk, Chen, Yi-An, Kawashima, Hitoshi, Mizuguchi, Kenji
Publicado 2019

A phylogenomic profile of hemerythrins, the nonheme diiron binding respiratory proteins

por Bailly, Xavier, Vanin, Stefano, Chabasse, Christine, Mizuguchi, Kenji, Vinogradov, Serge N
Publicado 2008

Functional site plasticity in domain superfamilies()

por Dessailly, Benoit H., Dawson, Natalie L., Mizuguchi, Kenji, Orengo, Christine A.
Publicado 2013

PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs

por Ito, Jun-ichi, Ikeda, Kazuyoshi, Yamada, Kazunori, Mizuguchi, Kenji, Tomii, Kentaro
Publicado 2014

Ligand-induced Ordering of the C-terminal Tail Primes STING for Phosphorylation by TBK1

por Tsuchiya, Yuko, Jounai, Nao, Takeshita, Fumihiko, Ishii, Ken J., Mizuguchi, Kenji
Publicado 2016

Snaq: A Dynamic Snakemake Pipeline for Microbiome Data Analysis With QIIME2

por Mohsen, Attayeb, Chen, Yi-An, Allendes Osorio, Rodolfo S., Higuchi, Chihiro, Mizuguchi, Kenji
Publicado 2022

Brefeldin A-inhibited guanine nucleotide-exchange protein 3 (BIG3) is predicted to interact with its partner through an ARM-type α-helical structure

por Chen, Yi-An, Murakami, Yoichi, Ahmad, Shandar, Yoshimaru, Tetsuro, Katagiri, Toyomasa, Mizuguchi, Kenji
Publicado 2014