Dynamic models of viral replication and latency

por Mohammadi, Pejman, Ciuffi, Angela, Beerenwinkel, Niko
Publicado 2015

Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change

por Mohammadi, Pejman, Castel, Stephane E., Brown, Andrew A., Lappalainen, Tuuli
Publicado 2017

Bioinformatics and HIV Latency

por Ciuffi, Angela, Mohammadi, Pejman, Golumbeanu, Monica, di Iulio, Julia, Telenti, Amalio
Publicado 2015

Allele-specific expression: applications in cancer and technical considerations

por Robles-Espinoza, Carla Daniela, Mohammadi, Pejman, Bonilla, Ximena, Gutierrez-Arcelus, Maria
Publicado 2021

Tools and best practices for data processing in allelic expression analysis

por Castel, Stephane E., Levy-Moonshine, Ami, Mohammadi, Pejman, Banks, Eric, Lappalainen, Tuuli
Publicado 2015

Rare variant phasing and haplotypic expression from RNA sequencing with phASER

por Castel, Stephane E., Mohammadi, Pejman, Chung, Wendy K., Shen, Yufeng, Lappalainen, Tuuli
Publicado 2016

A vast resource of allelic expression data spanning human tissues

por Castel, Stephane E., Aguet, François, Mohammadi, Pejman, Ardlie, Kristin G., Lappalainen, Tuuli
Publicado 2020

Analysis of Stop-Gain and Frameshift Variants in Human Innate Immunity Genes

por Rausell, Antonio, Mohammadi, Pejman, McLaren, Paul J., Bartha, Istvan, Xenarios, Ioannis, Fellay, Jacques, Telenti, Amalio
Publicado 2014

The Characteristics of Heterozygous Protein Truncating Variants in the Human Genome

por Bartha, István, Rausell, Antonio, McLaren, Paul J., Mohammadi, Pejman, Tardaguila, Manuel, Chaturvedi, Nimisha, Fellay, Jacques, Telenti, Amalio
Publicado 2015

Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection

por Golumbeanu, Monica, Desfarges, Sébastien, Hernandez, Céline, Quadroni, Manfredo, Rato, Sylvie, Mohammadi, Pejman, Telenti, Amalio, Beerenwinkel, Niko, Ciuffi, Angela
Publicado 2019

HIV-1 RNAs are Not Part of the Argonaute 2 Associated RNA Interference Pathway in Macrophages

por Vongrad, Valentina, Imig, Jochen, Mohammadi, Pejman, Kishore, Shivendra, Jaskiewicz, Lukasz, Hall, Jonathan, Günthard, Huldrych F., Beerenwinkel, Niko, Metzner, Karin J.
Publicado 2015

24 Hours in the Life of HIV-1 in a T Cell Line

por Mohammadi, Pejman, Desfarges, Sébastien, Bartha, István, Joos, Beda, Zangger, Nadine, Muñoz, Miguel, Günthard, Huldrych F., Beerenwinkel, Niko, Telenti, Amalio, Ciuffi, Angela
Publicado 2013

Correction: 24 Hours in the Life of HIV-1 in a T Cell Line

por Mohammadi, Pejman, Desfarges, Sébastien, Bartha, István, Joos, Beda, Zangger, Nadine, Muñoz, Miguel, Günthard, Huldrych F., Beerenwinkel, Niko, Telenti, Amalio, Ciuffi, Angela
Publicado 2015

Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk

por Castel, Stephane E., Cervera, Alejandra, Mohammadi, Pejman, Aguet, François, Reverter, Ferran, Wolman, Aaron, Guigo, Roderic, Iossifov, Ivan, Vasileva, Ana, Lappalainen, Tuuli
Publicado 2018

Dynamics of HIV Latency and Reactivation in a Primary CD4+ T Cell Model

por Mohammadi, Pejman, di Iulio, Julia, Muñoz, Miguel, Martinez, Raquel, Bartha, István, Cavassini, Matthias, Thorball, Christian, Fellay, Jacques, Beerenwinkel, Niko, Ciuffi, Angela, Telenti, Amalio
Publicado 2014

Transcription factor regulation of eQTL activity across individuals and tissues

por Flynn, Elise D., Tsu, Athena L., Kasela, Silva, Kim-Hellmuth, Sarah, Aguet, Francois, Ardlie, Kristin G., Bussemaker, Harmen J., Mohammadi, Pejman, Lappalainen, Tuuli
Publicado 2022

Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay

por Trypsteen, Wim, Mohammadi, Pejman, Van Hecke, Clarissa, Mestdagh, Pieter, Lefever, Steve, Saeys, Yvan, De Bleser, Pieter, Vandesompele, Jo, Ciuffi, Angela, Vandekerckhove, Linos, De Spiegelaere, Ward
Publicado 2016

Corrigendum: Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay

por Trypsteen, Wim, Mohammadi, Pejman, Van Hecke, Clarissa, Mestdagh, Pieter, Lefever, Steve, Saeys, Yvan, De Bleser, Pieter, Vandesompele, Jo, Ciuffi, Angela, Vandekerckhove, Linos, De Spiegelaere, Ward
Publicado 2017

The regulatory landscape of multiple brain regions in outbred heterogeneous stock rats

por Munro, Daniel, Wang, Tengfei, Chitre, Apurva S, Polesskaya, Oksana, Ehsan, Nava, Gao, Jianjun, Gusev, Alexander, Woods, Leah C Solberg, Saba, Laura M, Chen, Hao, Palmer, Abraham A, Mohammadi, Pejman
Publicado 2022

Integrative analyses identify genes and their functional consequences underlying COVID-19 hospitalization

por Singh, Kritika, Pathak, Gita, Miller-Fleming, Tyne, Wendt, Frank, Ehsan, Nava, Hou, Kangcheng, Johnson, Ruth, Lu, Zeyun, Gopalan, Shyamalika, Yang, Loic, Mohammadi, Pejman, Pasaniuc, Bogdan, Polimanti, Renato, Davis, Lea, Mancuso, Nicholas
Publicado 2021