Solvent Accessibility Promotes Rotamer Errors during Protein Modeling with Major Side-Chain Prediction Programs

por Hameduh, Tareq, Mokry, Michal, Miller, Andrew D., Heger, Zbynek, Haddad, Yazan
Publicado 2023

Sex-dependent gene co-expression in the human body

por Hartman, Robin J. G., Mokry, Michal, Pasterkamp, Gerard, den Ruijter, Hester M.
Publicado 2021

A rotamer relay information system in the epidermal growth factor receptor–drug complexes reveals clues to new paradigm in protein conformational change

por Hameduh, Tareq, Mokry, Michal, Miller, Andrew D., Adam, Vojtech, Heger, Zbynek, Haddad, Yazan
Publicado 2021

The Applications of Single-Cell RNA Sequencing in Atherosclerotic Disease

por Slenders, Lotte, Tessels, Daniëlle E., van der Laan, Sander W., Pasterkamp, Gerard, Mokry, Michal
Publicado 2022

Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classes

por Mokry, Michal, Hatzis, Pantelis, Schuijers, Jurian, Lansu, Nico, Ruzius, Frans-Paul, Clevers, Hans, Cuppen, Edwin
Publicado 2012

Extensive Association of Common Disease Variants with Regulatory Sequence

por Mokry, Michal, Harakalova, Magdalena, Asselbergs, Folkert W., de Bakker, Paul I. W., Nieuwenhuis, Edward E. S.
Publicado 2016

Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach

por Mokry, Michal, Nijman, Isaäc J, van Dijken, Anja, Benjamins, Rene, Heidstra, Renze, Scheres, Ben, Cuppen, Edwin
Publicado 2011

Microinjection induces changes in the transcriptome of bovine oocytes

por Tan, Minjie, van Tol, Helena T. A., Mokry, Michal, Stout, Tom A. E., Roelen, Bernard A. J.
Publicado 2020

A Unique Monocyte Transcriptome Discriminates Sickle Cell Disease From Other Hereditary Hemolytic Anemias and Shows the Particular Importance of Lipid and Interferon Signaling

por van Vuren, Annelies J., van Straaten, Stephanie, Mokry, Michal, van Wijk, Richard, van Beers, Eduard J.
Publicado 2021

E2F7 represses a network of oscillating cell cycle genes to control S-phase progression

por Westendorp, Bart, Mokry, Michal, Groot Koerkamp, Marian J.A., Holstege, Frank C.P., Cuppen, Edwin, de Bruin, Alain
Publicado 2012

Accurate SNP and mutation detection by targeted custom microarray-based genomic enrichment of short-fragment sequencing libraries

por Mokry, Michal, Feitsma, Harma, Nijman, Isaac J., de Bruijn, Ewart, van der Zaag, Pieter J., Guryev, Victor, Cuppen, Edwin
Publicado 2010

Activin-A Induces Early Differential Gene Expression Exclusively in Periodontal Ligament Fibroblasts from Fibrodysplasia Ossificans Progressiva Patients

por Schoenmaker, Ton, Mokry, Michal, Micha, Dimitra, Netelenbos, Coen, Bravenboer, Nathalie, Gilijamse, Marjolijn, Eekhoff, E. Marelise W., de Vries, Teun J.
Publicado 2021

Genomic DNA Pooling Strategy for Next-Generation Sequencing-Based Rare Variant Discovery in Abdominal Aortic Aneurysm Regions of Interest—Challenges and Limitations

por Harakalova, Magdalena, Nijman, Isaäc J., Medic, Jelena, Mokry, Michal, Renkens, Ivo, Blankensteijn, Jan D., Kloosterman, Wigard, Baas, Annette F., Cuppen, Edwin
Publicado 2011

Efficient Double Fragmentation ChIP-seq Provides Nucleotide Resolution Protein-DNA Binding Profiles

por Mokry, Michal, Hatzis, Pantelis, de Bruijn, Ewart, Koster, Jan, Versteeg, Rogier, Schuijers, Jurian, van de Wetering, Marc, Guryev, Victor, Clevers, Hans, Cuppen, Edwin
Publicado 2010

Intrinsic transcriptomic sex differences in human endothelial cells at birth and in adults are associated with coronary artery disease targets

por Hartman, Robin J. G., Kapteijn, Daniek M. C., Haitjema, Saskia, Bekker, Mireille N., Mokry, Michal, Pasterkamp, Gerard, Civelek, Mete, den Ruijter, Hester M.
Publicado 2020

Developmental programming in human umbilical cord vein endothelial cells following fetal growth restriction

por Terstappen, Fieke, Calis, Jorg J. A., Paauw, Nina D., Joles, Jaap A., van Rijn, Bas B., Mokry, Michal, Plösch, Torsten, Lely, A. Titia
Publicado 2020

A comprehensive transcriptomic comparison of hepatocyte model systems improves selection of models for experimental use

por Ardisasmita, Arif Ibrahim, Schene, Imre F., Joore, Indi P., Kok, Gautam, Hendriks, Delilah, Artegiani, Benedetta, Mokry, Michal, Nieuwenhuis, Edward E. S., Fuchs, Sabine A.
Publicado 2022

Indoxyl Sulfate Stimulates Angiogenesis by Regulating Reactive Oxygen Species Production via CYP1B1

por Pei, Jiayi, Juni, Rio, Harakalova, Magdalena, Duncker, Dirk J., Asselbergs, Folkert W., Koolwijk, Pieter, van Hinsbergh, Victor, Verhaar, Marianne C., Mokry, Michal, Cheng, Caroline
Publicado 2019

Transcriptome analysis reveals microvascular endothelial cell-dependent pericyte differentiation

por Brandt, Maarten M., van Dijk, Christian G. M., Maringanti, Ranganath, Chrifi, Ihsan, Kramann, Rafael, Verhaar, Marianne C., Duncker, Dirk J., Mokry, Michal, Cheng, Caroline
Publicado 2019

Transcriptomic and Epigenomic Profiling of Histone Deacetylase Inhibitor Treatment Reveals Distinct Gene Regulation Profiles Leading to Impaired Neutrophil Development

por Govers, Anita M.A.P., Wiggers, Caroline R.M., van Boxtel, Ruben, Mokry, Michal, Nieuwenhuis, Edward E.S., Creyghton, Menno P., Bartels, Marije, Coffer, Paul J.
Publicado 2019