Whole-Genome Comparisons of Ergot Fungi Reveals the Divergence and Evolution of Species within the Genus Claviceps Are the Result of Varying Mechanisms Driving Genome Evolution and...

por Wyka, Stephen A, Mondo, Stephen J, Liu, Miao, Dettman, Jeremy, Nalam, Vamsi, Broders, Kirk D
Publicado 2021

Transitions of foliar mycobiota community and transcriptome in response to pathogenic conifer needle interactions

por Ata, Jessa P., Ibarra Caballero, Jorge R., Abdo, Zaid, Mondo, Stephen J., Stewart, Jane E.
Publicado 2022

A Genomic Catalog of Stress Response Genes in Anaerobic Fungi for Applications in Bioproduction

por Swift, Candice L., Malinov, Nikola G., Mondo, Stephen J., Salamov, Asaf, Grigoriev, Igor V., O'Malley, Michelle A.
Publicado 2021

Diversity of cytosine methylation across the fungal tree of life

por Bewick, Adam J., Hofmeister, Brigitte T., Powers, Rob, Mondo, Stephen J., Grigoriev, Igor V., James, Timothy Y., Stajich, Jason E., Schmitz, Robert J.
Publicado 2019

Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357

por Skerker, Jeffrey M, Pianalto, Kaila M, Mondo, Stephen J, Yang, Kunlong, Arkin, Adam P, Keller, Nancy P, Grigoriev, Igor V, Louise Glass, N Louise
Publicado 2021

Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi

por Mondo, Stephen J., Lastovetsky, Olga A., Gaspar, Maria L., Schwardt, Nicole H., Barber, Colin C., Riley, Robert, Sun, Hui, Grigoriev, Igor V., Pawlowska, Teresa E.
Publicado 2017

PhycoCosm, a comparative algal genomics resource

por Grigoriev, Igor V, Hayes, Richard D, Calhoun, Sara, Kamel, Bishoy, Wang, Alice, Ahrendt, Steven, Dusheyko, Sergey, Nikitin, Roman, Mondo, Stephen J, Salamov, Asaf, Shabalov, Igor, Kuo, Alan
Publicado 2020

Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

por Mondo, Stephen J., Jiménez, Diego Javier, Hector, Ronald E., Lipzen, Anna, Yan, Mi, LaButti, Kurt, Barry, Kerrie, van Elsas, Jan Dirk, Grigoriev, Igor V., Nichols, Nancy N.
Publicado 2019

A TAL effector-like protein of an endofungal bacterium increases the stress tolerance and alters the transcriptome of the host

por Carter, Morgan E., Carpenter, Sara C.D., Dubrow, Zoë E., Sabol, Mark R., Rinaldi, Fabio C., Lastovetsky, Olga A., Mondo, Stephen J., Pawlowska, Teresa E., Bogdanove, Adam J.
Publicado 2020

Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin

por Walker, Allison K., Frasz, Samantha L., Seifert, Keith A., Miller, J. David, Mondo, Stephen J., LaButti, Kurt, Lipzen, Anna, Dockter, Rhyan B., Kennedy, Megan C., Grigoriev, Igor V., Spatafora, Joseph W.
Publicado 2016

Erratum for Walker et al., Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin

por Walker, Allison K., Frasz, Samantha L., Seifert, Keith A., Miller, J. David, Mondo, Stephen J., LaButti, Kurt, Lipzen, Anna, Dockter, Rhyan B., Kennedy, Megan C., Grigoriev, Igor V., Spatafora, Joseph W.
Publicado 2016

Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales)

por Urquhart, Andrew S., Mondo, Stephen J., Mäkelä, Miia R., Hane, James K., Wiebenga, Ad, He, Guifen, Mihaltcheva, Sirma, Pangilinan, Jasmyn, Lipzen, Anna, Barry, Kerrie, de Vries, Ronald P., Grigoriev, Igor V., Idnurm, Alexander
Publicado 2018

Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides

por Coradetti, Samuel T, Pinel, Dominic, Geiselman, Gina M, Ito, Masakazu, Mondo, Stephen J, Reilly, Morgann C, Cheng, Ya-Fang, Bauer, Stefan, Grigoriev, Igor V, Gladden, John M, Simmons, Blake A, Brem, Rachel B, Arkin, Adam P, Skerker, Jeffrey M
Publicado 2018

Anaerobic gut fungi are an untapped reservoir of natural products

por Swift, Candice L., Louie, Katherine B., Bowen, Benjamin P., Olson, Heather M., Purvine, Samuel O., Salamov, Asaf, Mondo, Stephen J., Solomon, Kevin V., Wright, Aaron T., Northen, Trent R., Grigoriev, Igor V., Keller, Nancy P., O’Malley, Michelle A.
Publicado 2021

Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi

por Longley, Reid, Robinson, Aaron, Liber, Julian A., Bryson, Abigail E., Morales, Demosthenes P., LaButti, Kurt, Riley, Robert, Mondo, Stephen J., Kuo, Alan, Yoshinaga, Yuko, Daum, Chris, Barry, Kerrie, Grigoriev, Igor V., Desirò, Alessandro, Chain, Patrick S. G., Bonito, Gregory
Publicado 2023

Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate l...

por Brown, Jennifer L., Swift, Candice L., Mondo, Stephen J., Seppala, Susanna, Salamov, Asaf, Singan, Vasanth, Henrissat, Bernard, Drula, Elodie, Henske, John K., Lee, Samantha, LaButti, Kurt, He, Guifen, Yan, Mi, Barry, Kerrie, Grigoriev, Igor V., O’Malley, Michelle A.
Publicado 2021

Wildfire-dependent changes in soil microbiome diversity and function

por Nelson, Amelia R., Narrowe, Adrienne B., Rhoades, Charles C., Fegel, Timothy S., Daly, Rebecca A., Roth, Holly K., Chu, Rosalie K., Amundson, Kaela K., Young, Robert B., Steindorff, Andrei S., Mondo, Stephen J., Grigoriev, Igor V., Salamov, Asaf, Borch, Thomas, Wilkins, Michael J.
Publicado 2022

Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus

por Wilken, St. Elmo, Monk, Jonathan M., Leggieri, Patrick A., Lawson, Christopher E., Lankiewicz, Thomas S., Seppälä, Susanna, Daum, Chris G., Jenkins, Jerry, Lipzen, Anna M., Mondo, Stephen J., Barry, Kerrie W., Grigoriev, Igor V., Henske, John K., Theodorou, Michael K., Palsson, Bernhard O., Petzold, Linda R., O’Malley, Michelle A.
Publicado 2021

Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus

por Pomraning, Kyle R., Dai, Ziyu, Munoz, Nathalie, Kim, Young-Mo, Gao, Yuqian, Deng, Shuang, Lemmon, Teresa, Swita, Marie S., Zucker, Jeremy D., Kim, Joonhoon, Mondo, Stephen J., Panisko, Ellen, Burnet, Meagan C., Webb-Robertson, Bobbie-Jo M., Hofstad, Beth, Baker, Scott E., Burnum-Johnson, Kristin E., Magnuson, Jon K.
Publicado 2022

Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors

por Wang, Yan, Chang, Ying, Ortañez, Jericho, Peña, Jesús F, Carter-House, Derreck, Reynolds, Nicole K, Smith, Matthew E, Benny, Gerald, Mondo, Stephen J, Salamov, Asaf, Lipzen, Anna, Pangilinan, Jasmyn, Guo, Jie, LaButti, Kurt, Andreopolous, William, Tritt, Andrew, Keymanesh, Keykhosrow, Yan, Mi, Barry, Kerrie, Grigoriev, Igor V, Spatafora, Joseph W, Stajich, Jason E
Publicado 2023