Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients

por Béal, Jonas, Montagud, Arnau, Traynard, Pauline, Barillot, Emmanuel, Calzone, Laurence
Publicado 2019

Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

por Montagud, Arnau, Navarro, Emilio, Fernández de Córdoba, Pedro, Urchueguía, Javier F, Patil, Kiran Raosaheb
Publicado 2010

Large scale evaluation of differences between network-based and pairwise sequence-alignment-based methods of dendrogram reconstruction

por Gamermann, Daniel, Montagud, Arnau, Conejero, J. Alberto, Fernández de Córdoba, Pedro, Urchueguía, Javier F.
Publicado 2019

Optimizing Dosage-Specific Treatments in a Multi-Scale Model of a Tumor Growth

por Ponce-de-Leon, Miguel, Montagud, Arnau, Akasiadis, Charilaos, Schreiber, Janina, Ntiniakou, Thaleia, Valencia, Alfonso
Publicado 2022

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling

por Letort, Gaelle, Montagud, Arnau, Stoll, Gautier, Heiland, Randy, Barillot, Emmanuel, Macklin, Paul, Zinovyev, Andrei, Calzone, Laurence
Publicado 2019

Multiscale model of the different modes of cancer cell invasion

por Ruscone, Marco, Montagud, Arnau, Chavrier, Philippe, Destaing, Olivier, Bonnet, Isabelle, Zinovyev, Andrei, Barillot, Emmanuel, Noël, Vincent, Calzone, Laurence
Publicado 2023

PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks

por Ponce-de-Leon, Miguel, Montagud, Arnau, Noël, Vincent, Meert, Annika, Pradas, Gerard, Barillot, Emmanuel, Calzone, Laurence, Valencia, Alfonso
Publicado 2023

Artificial Intelligence–Aided Precision Medicine for COVID-19: Strategic Areas of Research and Development

por Santus, Enrico, Marino, Nicola, Cirillo, Davide, Chersoni, Emmanuele, Montagud, Arnau, Santuccione Chadha, Antonella, Valencia, Alfonso, Hughes, Kevin, Lindvall, Charlotta
Publicado 2021

Improving a Synechocystis-based photoautotrophic chassis through systematic genome mapping and validation of neutral sites

por Pinto, Filipe, Pacheco, Catarina C., Oliveira, Paulo, Montagud, Arnau, Landels, Andrew, Couto, Narciso, Wright, Phillip C., Urchueguía, Javier F., Tamagnini, Paula
Publicado 2015

Microbial Diversity in the Midguts of Field and Lab-Reared Populations of the European Corn Borer Ostrinia nubilalis

por Belda, Eugeni, Pedrola, Laia, Peretó, Juli, Martínez-Blanch, Juan F., Montagud, Arnau, Navarro, Emilio, Urchueguía, Javier, Ramón, Daniel, Moya, Andrés, Porcar, Manuel
Publicado 2011

Generation and Evaluation of a Genome-Scale Metabolic Network Model of Synechococcus elongatus PCC7942

por Triana, Julián, Montagud†, Arnau, Siurana, Maria, Fuente, David, Urchueguía, Arantxa, Gamermann, Daniel, Torres, Javier, Tena, Jose, de Córdoba, Pedro Fernández, Urchueguía, Javier F.
Publicado 2014

Patient-specific Boolean models of signalling networks guide personalised treatments

por Montagud, Arnau, Béal, Jonas, Tobalina, Luis, Traynard, Pauline, Subramanian, Vigneshwari, Szalai, Bence, Alföldi, Róbert, Puskás, László, Valencia, Alfonso, Barillot, Emmanuel, Saez-Rodriguez, Julio, Calzone, Laurence
Publicado 2022

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

por Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, Devasahayam Arokia Balaya, Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic‐Milacic, Marija, Senff Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Valdeolivas, Alberto, Esteban‐Medina, Marina, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Augé, Franck, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Wilighagen, Egon L, Pico, Alexander R, Evelo, Chris T, Gillespie, Marc E, Stein, Lincoln D, Hermjakob, Henning, D'Eustachio, Peter, Saez‐Rodriguez, Julio, Dopazo, Joaquin, Valencia, Alfonso, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard
Publicado 2021

COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms

por Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, D A B, Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic‐Milacic, Marija, Senff‐Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Valdeolivas, Alberto, Esteban‐Medina, Marina, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Augé, Franck, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Willighagen, Egon L, Pico, Alexander R, Evelo, Chris T, Gillespie, Marc E, Stein, Lincoln D, Hermjakob, Henning, D'Eustachio, Peter, Saez‐Rodriguez, Julio, Dopazo, Joaquin, Valencia, Alfonso, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard
Publicado 2021