Deep learning for genomics using Janggu

por Kopp, Wolfgang, Monti, Remo, Tamburrini, Annalaura, Ohler, Uwe, Akalin, Altuna
Publicado 2020

Identifying interpretable gene-biomarker associations with functionally informed kernel-based tests in 190,000 exomes

por Monti, Remo, Rautenstrauch, Pia, Ghanbari, Mahsa, James, Alva Rani, Kirchler, Matthias, Ohler, Uwe, Konigorski, Stefan, Lippert, Christoph
Publicado 2022

A switch in transcription and cell fate governs the onset of an epigenetically-deregulated tumor in Drosophila

por Torres, Joana, Monti, Remo, Moore, Ariane L, Seimiya, Makiko, Jiang, Yanrui, Beerenwinkel, Niko, Beisel, Christian, Beira, Jorge V, Paro, Renato
Publicado 2018

The ectomycorrhizal fungus Pisolithus microcarpus encodes a microRNA involved in cross-kingdom gene silencing during symbiosis

por Wong-Bajracharya, Johanna, Singan, Vasanth R., Monti, Remo, Plett, Krista L., Ng, Vivian, Grigoriev, Igor V., Martin, Francis M., Anderson, Ian C., Plett, Jonathan M.
Publicado 2022

HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes

por Wharrie, Sophie, Yang, Zhiyu, Raj, Vishnu, Monti, Remo, Gupta, Rahul, Wang, Ying, Martin, Alicia, O’Connor, Luke J, Kaski, Samuel, Marttinen, Pekka, Palamara, Pier Francesco, Lippert, Christoph, Ganna, Andrea
Publicado 2023

Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb

por Monti, Remo, Barozzi, Iros, Osterwalder, Marco, Lee, Elizabeth, Kato, Momoe, Garvin, Tyler H., Plajzer-Frick, Ingrid, Pickle, Catherine S., Akiyama, Jennifer A., Afzal, Veena, Beerenwinkel, Niko, Dickel, Diane E., Visel, Axel, Pennacchio, Len A.
Publicado 2017

The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus

por Wu, Vincent W., Thieme, Nils, Huberman, Lori B., Dietschmann, Axel, Kowbel, David J., Lee, Juna, Calhoun, Sara, Singan, Vasanth R., Lipzen, Anna, Xiong, Yi, Monti, Remo, Blow, Matthew J., O’Malley, Ronan C., Grigoriev, Igor V., Benz, J. Philipp, Glass, N. Louise
Publicado 2020