Chapter 12: Human Microbiome Analysis

por Morgan, Xochitl C., Huttenhower, Curtis
Publicado 2012

Searching for a Consensus Among Inflammatory Bowel Disease Studies: A Systematic Meta-Analysis

por Abdel-Rahman, Lama Izzat Hasan, Morgan, Xochitl C
Publicado 2022

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

por Segata, Nicola, Börnigen, Daniela, Morgan, Xochitl C., Huttenhower, Curtis
Publicado 2013

Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining

por Morgan, Xochitl C, Ni, Shulin, Miranker, Daniel P, Iyer, Vishwanath R
Publicado 2007

Type I CRISPR-Cas provides robust immunity but incomplete attenuation of phage-induced cellular stress

por Malone, Lucia M, Hampton, Hannah G, Morgan, Xochitl C, Fineran, Peter C
Publicado 2021

Computational meta'omics for microbial community studies

por Segata, Nicola, Boernigen, Daniela, Tickle, Timothy L, Morgan, Xochitl C, Garrett, Wendy S, Huttenhower, Curtis
Publicado 2013

Experimental design and quantitative analysis of microbial community multiomics

por Mallick, Himel, Ma, Siyuan, Franzosa, Eric A., Vatanen, Tommi, Morgan, Xochitl C., Huttenhower, Curtis
Publicado 2017

Functional profiling of the gut microbiome in disease-associated inflammation

por Börnigen, Daniela, Morgan, Xochitl C, Franzosa, Eric A, Ren, Boyu, Xavier, Ramnik J, Garrett, Wendy S, Huttenhower, Curtis
Publicado 2013

Agricultural Origins of a Highly Persistent Lineage of Vancomycin-Resistant Enterococcus faecalis in New Zealand

por Rushton-Green, Rowena, Darnell, Rachel L., Taiaroa, George, Carter, Glen P., Cook, Gregory M., Morgan, Xochitl C.
Publicado 2019

Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T)

por Lee, Kevin C. Y., Morgan, Xochitl C., Power, Jean F., Dunfield, Peter F., Huttenhower, Curtis, Stott, Matthew B.
Publicado 2015

The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone

por Lee, Kevin C., Stott, Matthew B., Dunfield, Peter F., Huttenhower, Curtis, McDonald, Ian R., Morgan, Xochitl C.
Publicado 2016

Manipulating the microbiome alters regenerative outcomes in Xenopus laevis tadpoles via lipopolysaccharide signalling

por Chapman, Phoebe A., Gilbert, Campbell B., Devine, Thomas J., Hudson, Daniel T., Ward, Joanna, Morgan, Xochitl C., Beck, Caroline W.
Publicado 2022

bioBakery: a meta’omic analysis environment

por McIver, Lauren J, Abu-Ali, Galeb, Franzosa, Eric A, Schwager, Randall, Morgan, Xochitl C, Waldron, Levi, Segata, Nicola, Huttenhower, Curtis
Publicado 2018

Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies

por Gardner, Paul P., Watson, Renee J., Morgan, Xochitl C., Draper, Jenny L., Finn, Robert D., Morales, Sergio E., Stott, Matthew B.
Publicado 2019

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

por Morgan, Xochitl C, Kabakchiev, Boyko, Waldron, Levi, Tyler, Andrea D, Tickle, Timothy L, Milgrom, Raquel, Stempak, Joanne M, Gevers, Dirk, Xavier, Ramnik J, Silverberg, Mark S, Huttenhower, Curtis
Publicado 2015

A reproducible approach to high-throughput biological data acquisition and integration

por Börnigen, Daniela, Moon, Yo Sup, Rahnavard, Gholamali, Waldron, Levi, McIver, Lauren, Shafquat, Afrah, Franzosa, Eric A., Miropolsky, Larissa, Sweeney, Christopher, Morgan, Xochitl C., Garrett, Wendy S., Huttenhower, Curtis
Publicado 2015

High-sensitivity pattern discovery in large, paired multiomic datasets

por Ghazi, Andrew R, Sucipto, Kathleen, Rahnavard, Ali, Franzosa, Eric A, McIver, Lauren J, Lloyd-Price, Jason, Schwager, Emma, Weingart, George, Moon, Yo Sup, Morgan, Xochitl C, Waldron, Levi, Huttenhower, Curtis
Publicado 2022

Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment

por Hsu, Tiffany, Joice, Regina, Vallarino, Jose, Abu-Ali, Galeb, Hartmann, Erica M., Shafquat, Afrah, DuLong, Casey, Baranowski, Catherine, Gevers, Dirk, Green, Jessica L., Morgan, Xochitl C., Spengler, John D., Huttenhower, Curtis
Publicado 2016

Fluoride Depletes Acidogenic Taxa in Oral but Not Gut Microbial Communities in Mice

por Yasuda, Koji, Hsu, Tiffany, Gallini, Carey A., Mclver, Lauren J., Schwager, Emma, Shi, Andy, DuLong, Casey R., Schwager, Randall N., Abu-Ali, Galeb S., Franzosa, Eric A., Garrett, Wendy S., Huttenhower, Curtis, Morgan, Xochitl C.
Publicado 2017

Microbial biogeography of 925 geothermal springs in New Zealand

por Power, Jean F., Carere, Carlo R., Lee, Charles K., Wakerley, Georgia L. J., Evans, David W., Button, Mathew, White, Duncan, Climo, Melissa D., Hinze, Annika M., Morgan, Xochitl C., McDonald, Ian R., Cary, S. Craig, Stott, Matthew B.
Publicado 2018