Multi-Scale Flexible Fitting of Proteins to Cryo-EM Density Maps at Medium Resolution

por Kulik, Marta, Mori, Takaharu, Sugita, Yuji
Publicado 2021

Molecular mechanisms for dynamic regulation of N1 riboswitch by aminoglycosides

por Kulik, Marta, Mori, Takaharu, Sugita, Yuji, Trylska, Joanna
Publicado 2018

Efficient Flexible Fitting Refinement with Automatic Error Fixing for De Novo Structure Modeling from Cryo-EM Density Maps

por Mori, Takaharu, Terashi, Genki, Matsuoka, Daisuke, Kihara, Daisuke, Sugita, Yuji
Publicado 2021

Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins

por Ahmad, Shandar, Singh, Yumlembam Hemajit, Paudel, Yogesh, Mori, Takaharu, Sugita, Yuji, Mizuguchi, Kenji
Publicado 2010

Lipid recognition propensities of amino acids in membrane proteins from atomic resolution data

por Morita, Mizuki, Katta, AVSK Mohan, Ahmad, Shandar, Mori, Takaharu, Sugita, Yuji, Mizuguchi, Kenji
Publicado 2011

Elucidation of interactions regulating conformational stability and dynamics of SARS-CoV-2 S-protein

por Mori, Takaharu, Jung, Jaewoon, Kobayashi, Chigusa, Dokainish, Hisham M., Re, Suyong, Sugita, Yuji
Publicado 2021

Unraveling SARS-CoV-2 spike protein activation pathway reveals unprecedented cryptic pockets

por Dokainish, Hisham M., Re, Suyong, Mori, Takaharu, Kobayashi, Chigusa, Jung, Jaewoon, Sugita, Yuji
Publicado 2022

The inherent flexibility of receptor binding domains in SARS-CoV-2 spike protein

por Dokainish, Hisham M, Re, Suyong, Mori, Takaharu, Kobayashi, Chigusa, Jung, Jaewoon, Sugita, Yuji
Publicado 2022

GENESIS: a hybrid-parallel and multi-scale molecular dynamics simulator with enhanced sampling algorithms for biomolecular and cellular simulations

por Jung, Jaewoon, Mori, Takaharu, Kobayashi, Chigusa, Matsunaga, Yasuhiro, Yoda, Takao, Feig, Michael, Sugita, Yuji
Publicado 2015

Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm

por Yu, Isseki, Mori, Takaharu, Ando, Tadashi, Harada, Ryuhei, Jung, Jaewoon, Sugita, Yuji, Feig, Michael
Publicado 2016