Iron–sulfur clusters have no right angles

por Moriarty, Nigel W., Adams, Paul D.
Publicado 2019

An editor for the generation and customization of geometry restraints

por Moriarty, Nigel W., Draizen, Eli J., Adams, Paul D.
Publicado 2017

Arginine off-kilter: guanidinium is not as planar as restraints denote

por Moriarty, Nigel W., Liebschner, Dorothee, Tronrud, Dale E., Adams, Paul D.
Publicado 2020

In situ ligand restraints from quantum-mechanical methods

por Liebschner, Dorothee, Moriarty, Nigel W., Poon, Billy K., Adams, Paul D.
Publicado 2023

Ligand identification using electron-density map correlations

por Terwilliger, Thomas C., Adams, Paul D., Moriarty, Nigel W., Cohn, Judith D.
Publicado 2007

A new default restraint library for the protein backbone in Phenix: a conformation-dependent geometry goes mainstream

por Moriarty, Nigel W., Tronrud, Dale E., Adams, Paul D., Karplus, P. Andrew
Publicado 2016

Evaluation of models determined by neutron diffraction and proposed improvements to their validation and deposition

por Liebschner, Dorothee, Afonine, Pavel V., Moriarty, Nigel W., Langan, Paul, Adams, Paul D.
Publicado 2018

Automated ligand fitting by core-fragment fitting and extension into density

por Terwilliger, Thomas C., Klei, Herbert, Adams, Paul D., Moriarty, Nigel W., Cohn, Judith D.
Publicado 2006

Overall protein structure quality assessment using hydrogen-bonding parameters

por Afonine, Pavel V., Sobolev, Oleg V., Moriarty, Nigel W., Terwilliger, Thomas C., Adams, Paul D.
Publicado 2023

Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement

por Headd, Jeffrey J., Echols, Nathaniel, Afonine, Pavel V., Moriarty, Nigel W., Gildea, Richard J., Adams, Paul D.
Publicado 2014

CERES: a cryo-EM re-refinement system for continuous improvement of deposited models

por Liebschner, Dorothee, Afonine, Pavel V., Moriarty, Nigel W., Poon, Billy K., Chen, Vincent B., Adams, Paul D.
Publicado 2021

Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix

por Moriarty, Nigel W., Janowski, Pawel A., Swails, Jason M., Nguyen, Hai, Richardson, Jane S., Case, David A., Adams, Paul D.
Publicado 2020

Ligand placement based on prior structures: the guided ligand-replacement method

por Klei, Herbert E., Moriarty, Nigel W., Echols, Nathaniel, Terwilliger, Thomas C., Baldwin, Eric T., Pokross, Matt, Posy, Shana, Adams, Paul D.
Publicado 2013

Polder maps: improving OMIT maps by excluding bulk solvent

por Liebschner, Dorothee, Afonine, Pavel V., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D.
Publicado 2017

Cryo-EM structure of the Rhodospirillum rubrum RC–LH1 complex at 2.5 Å

por Qian, Pu, Croll, Tristan I., Swainsbury, David J.K., Castro-Hartmann, Pablo, Moriarty, Nigel W., Sader, Kasim, Hunter, C. Neil
Publicado 2021

FEM: feature-enhanced map

por Afonine, Pavel V., Moriarty, Nigel W., Mustyakimov, Marat, Sobolev, Oleg V., Terwilliger, Thomas C., Turk, Dusan, Urzhumtsev, Alexandre, Adams, Paul D.
Publicado 2015

Improved ligand geometries in crystallographic refinement using AFITT in PHENIX

por Janowski, Pawel A., Moriarty, Nigel W., Kelley, Brian P., Case, David A., York, Darrin M., Adams, Paul D., Warren, Gregory L.
Publicado 2016

New tools for the analysis and validation of cryo-EM maps and atomic models

por Afonine, Pavel V., Klaholz, Bruno P., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D., Urzhumtsev, Alexandre
Publicado 2018

Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

por Terwilliger, Thomas C., Grosse-Kunstleve, Ralf W., Afonine, Pavel V., Moriarty, Nigel W., Zwart, Peter H., Hung, Li-Wei, Read, Randy J., Adams, Paul D.
Publicado 2008

Iterative-build OMIT maps: map improvement by iterative model building and refinement without model bias

por Terwilliger, Thomas C., Grosse-Kunstleve, Ralf W., Afonine, Pavel V., Moriarty, Nigel W., Adams, Paul D., Read, Randy J., Zwart, Peter H., Hung, Li-Wei
Publicado 2008