Improved indel detection in DNA and RNA via realignment with ABRA2

por Mose, Lisle E, Perou, Charles M, Parker, Joel S
Publicado 2019

Epstein-Barr Virus-Positive Cancers Show Altered B-Cell Clonality

por Selitsky, Sara R., Marron, David, Mose, Lisle E., Parker, Joel S., Dittmer, Dirk P.
Publicado 2018

Translating transcriptomic findings from cancer model systems to humans through joint dimension reduction

por Price, Brandon A., Marron, J. S., Mose, Lisle E., Perou, Charles M., Parker, Joel S.
Publicado 2023

ABRA: improved coding indel detection via assembly-based realignment

por Mose, Lisle E., Wilkerson, Matthew D., Hayes, D. Neil, Perou, Charles M., Parker, Joel S.
Publicado 2014

SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling

por Silva, Grace O., Siegel, Marni B., Mose, Lisle E., Parker, Joel S., Sun, Wei, Perou, Charles M., Chen, Mengjie
Publicado 2017

Genomic characterization of rare molecular subclasses of hepatocellular carcinoma

por Damrauer, Jeffrey S., Smith, Markia A., Walter, Vonn, Thennavan, Aatish, Mose, Lisle E., Selitsky, Sara R., Hoadley, Katherine A.
Publicado 2021

Virus expression detection reveals RNA-sequencing contamination in TCGA

por Selitsky, Sara R., Marron, David, Hollern, Daniel, Mose, Lisle E., Hoadley, Katherine A., Jones, Corbin, Parker, Joel S., Dittmer, Dirk P., Perou, Charles M.
Publicado 2020

Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V’DJer

por Mose, Lisle E., Selitsky, Sara R., Bixby, Lisa M., Marron, David L., Iglesia, Michael D., Serody, Jonathan S., Perou, Charles M., Vincent, Benjamin G., Parker, Joel S.
Publicado 2016

Prognostic value of B cells in cutaneous melanoma

por Selitsky, Sara R., Mose, Lisle E., Smith, Christof C., Chai, Shengjie, Hoadley, Katherine A., Dittmer, Dirk P., Moschos, Stergios J., Parker, Joel S., Vincent, Benjamin G.
Publicado 2019

Rad18 mediates specific mutational signatures and shapes the genomic landscape of carcinogen-induced tumors in vivo

por Lou, Jitong, Yang, Yang, Gu, Qisheng, Price, Brandon A, Qiu, Yuheng, Fedoriw, Yuri, Desai, Siddhi, Mose, Lisle E, Chen, Brian, Tateishi, Satoshi, Parker, Joel S, Vaziri, Cyrus, Wu, Di
Publicado 2021

Integrated RNA and DNA sequencing improves mutation detection in low purity tumors

por Wilkerson, Matthew D., Cabanski, Christopher R., Sun, Wei, Hoadley, Katherine A., Walter, Vonn, Mose, Lisle E., Troester, Melissa A., Hammerman, Peter S., Parker, Joel S., Perou, Charles M., Hayes, D. Neil
Publicado 2014

Genetic determinants of cellular addiction to DNA polymerase theta

por Feng, Wanjuan, Simpson, Dennis A., Carvajal-Garcia, Juan, Price, Brandon A., Kumar, Rashmi J., Mose, Lisle E., Wood, Richard D., Rashid, Naim, Purvis, Jeremy E., Parker, Joel S., Ramsden, Dale A., Gupta, Gaorav P.
Publicado 2019