Semi-supervised learning improves regulatory sequence prediction with unlabeled sequences

por Mourad, Raphaël
Publicado 2023

TADreg: a versatile regression framework for TAD identification, differential analysis and rearranged 3D genome prediction

por Mourad, Raphaël
Publicado 2022

Predicting the spatial organization of chromosomes using epigenetic data

por Mourad, Raphaël, Cuvier, Olivier
Publicado 2015

Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation

por Mourad, Raphaël, Cuvier, Olivier
Publicado 2016

TAD-free analysis of architectural proteins and insulators

por Mourad, Raphaël, Cuvier, Olivier
Publicado 2018

A hierarchical Bayesian network approach for linkage disequilibrium modeling and data-dimensionality reduction prior to genome-wide association studies

por Mourad, Raphaël, Sinoquet, Christine, Leray, Philippe
Publicado 2011

Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach

por Mourad, Raphaël, Li, Lang, Cuvier, Olivier
Publicado 2017

Visualization of Pairwise and Multilocus Linkage Disequilibrium Structure Using Latent Forests

por Mourad, Raphaël, Sinoquet, Christine, Dina, Christian, Leray, Philippe
Publicado 2011

Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution

por Mourad, Raphaël, Ginalski, Krzysztof, Legube, Gaëlle, Cuvier, Olivier
Publicado 2018

DeepG4: A deep learning approach to predict cell-type specific active G-quadruplex regions

por Rocher, Vincent, Genais, Matthieu, Nassereddine, Elissar, Mourad, Raphael
Publicado 2021

A dynamic time order network for time-series gene expression data analysis

por Zhang, Pengyue, Mourad, Raphaël, Xiang, Yang, Huang, Kun, Huang, Tim, Nephew, Kenneth, Liu, Yunlong, Li, Lang
Publicado 2012

Estrogen Induces Global Reorganization of Chromatin Structure in Human Breast Cancer Cells

por Mourad, Raphaël, Hsu, Pei-Yin, Juan, Liran, Shen, Changyu, Koneru, Prasad, Lin, Hai, Liu, Yunlong, Nephew, Kenneth, Huang, Tim H., Li, Lang
Publicado 2014

Loop extrusion as a mechanism for DNA damage repair foci formation

por Arnould, Coline, Rocher, Vincent, Finoux, Anne-Laure, Clouaire, Thomas, Li, Kevin, Zhou, Felix, Caron, Pierre, Mangeot, Philippe. E., Ricci, Emiliano P., Mourad, Raphael, Haber, James E, Noordermeer, Daan, Legube, Gaëlle
Publicado 2021

Chromatin compartmentalization regulates the response to DNA damage

por Arnould, Coline, Rocher, Vincent, Saur, Florian, Bader, Aldo S., Muzzopappa, Fernando, Collins, Sarah, Lesage, Emma, Le Bozec, Benjamin, Puget, Nadine, Clouaire, Thomas, Mangeat, Thomas, Mourad, Raphael, Ahituv, Nadav, Noordermeer, Daan, Erdel, Fabian, Bushell, Martin, Marnef, Aline, Legube, Gaëlle
Publicado 2023

Ethnic-specific associations of rare and low-frequency DNA sequence variants with asthma

por Igartua, Catherine, Myers, Rachel A., Mathias, Rasika A., Pino-Yanes, Maria, Eng, Celeste, Graves, Penelope E., Levin, Albert M., Del-Rio-Navarro, Blanca E., Jackson, Daniel J., Livne, Oren E., Rafaels, Nicholas, Edlund, Christopher K., Yang, James J., Huntsman, Scott, Salam, Muhammad T., Romieu, Isabelle, Mourad, Raphael, Gern, James E., Lemanske, Robert F., Wyss, Annah, Hoppin, Jane A., Barnes, Kathleen C., Burchard, Esteban G., Gauderman, W. James, Martinez, Fernando D., Raby, Benjamin A., Weiss, Scott T., Williams, L. Keoki, London, Stephanie J., Gilliland, Frank D., Nicolae, Dan L., Ober, Carole
Publicado 2015