Commitment to Aerobic Glycolysis Sustains Immunosuppression of Human Mesenchymal Stem Cells

por Liu, Yijun, Yuan, Xuegang, Muñoz, Nathalie, Logan, Timothy M., Ma, Teng
Publicado 2018

Activity-based protein profiling identifies alternating activation of enzymes involved in the bifidobacterium shunt pathway or mucin degradation in the gut microbiome response to s...

por Killinger, Bryan J., Whidbey, Christopher, Sadler, Natalie C., DeLeon, Adrian J., Munoz, Nathalie, Kim, Young-Mo, Wright, Aaron T.
Publicado 2022

Basin-scale biogeography of marine phytoplankton reflects cellular-scale optimization of metabolism and physiology

por Casey, John R., Boiteau, Rene M., Engqvist, Martin K. M., Finkel, Zoe V., Li, Gang, Liefer, Justin, Müller, Christian L., Muñoz, Nathalie, Follows, Michael J.
Publicado 2022

Tuning a high performing multiplexed-CRISPRi Pseudomonas putida strain to further enhance indigoidine production

por Czajka, Jeffrey J., Banerjee, Deepanwita, Eng, Thomas, Menasalvas, Javier, Yan, Chunsheng, Munoz, Nathalie Munoz, Poirier, Brenton C., Kim, Young-Mo, Baker, Scott E., Tang, Yinjie J., Mukhopadhyay, Aindrila
Publicado 2022

Single-cell isotope tracing reveals functional guilds of bacteria associated with the diatom Phaeodactylum tricornutum

por Mayali, Xavier, Samo, Ty J., Kimbrel, Jeff A., Morris, Megan M., Rolison, Kristina, Swink, Courtney, Ramon, Christina, Kim, Young-Mo, Munoz-Munoz, Nathalie, Nicora, Carrie, Purvine, Sam, Lipton, Mary, Stuart, Rhona K., Weber, Peter K.
Publicado 2023

Evaluation of chromosomal insertion loci in the Pseudomonas putida KT2440 genome for predictable biosystems design

por Chaves, Julie E., Wilton, Rosemarie, Gao, Yuqian, Munoz, Nathalie Munoz, Burnet, Meagan C., Schmitz, Zachary, Rowan, John, Burdick, Leah H., Elmore, Joshua, Guss, Adam, Close, Dan, Magnuson, Jon K., Burnum-Johnson, Kristin E., Michener, Joshua K.
Publicado 2020

Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides

por Kim, Joonhoon, Coradetti, Samuel T., Kim, Young-Mo, Gao, Yuqian, Yaegashi, Junko, Zucker, Jeremy D., Munoz, Nathalie, Zink, Erika M., Burnum-Johnson, Kristin E., Baker, Scott E., Simmons, Blake A., Skerker, Jeffrey M., Gladden, John M., Magnuson, Jon K.
Publicado 2021

Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species

por Dai, Ziyu, Pomraning, Kyle R., Deng, Shuang, Kim, Joonhoon, Campbell, Kristen B., Robles, Ana L., Hofstad, Beth A., Munoz, Nathalie, Gao, Yuqian, Lemmon, Teresa, Swita, Marie S., Zucker, Jeremy D., Kim, Young-Mo, Burnum-Johnson, Kristin E., Magnuson, Jon K.
Publicado 2023

Production of ent-kaurene from lignocellulosic hydrolysate in Rhodosporidium toruloides

por Geiselman, Gina M., Zhuang, Xun, Kirby, James, Tran-Gyamfi, Mary B., Prahl, Jan-Philip, Sundstrom, Eric R., Gao, Yuqian, Munoz Munoz, Nathalie, Nicora, Carrie D., Clay, Derek M., Papa, Gabriella, Burnum-Johnson, Kristin E., Magnuson, Jon K., Tanjore, Deepti, Skerker, Jeffrey M., Gladden, John M.
Publicado 2020

Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus

por Pomraning, Kyle R., Dai, Ziyu, Munoz, Nathalie, Kim, Young-Mo, Gao, Yuqian, Deng, Shuang, Lemmon, Teresa, Swita, Marie S., Zucker, Jeremy D., Kim, Joonhoon, Mondo, Stephen J., Panisko, Ellen, Burnet, Meagan C., Webb-Robertson, Bobbie-Jo M., Hofstad, Beth, Baker, Scott E., Burnum-Johnson, Kristin E., Magnuson, Jon K.
Publicado 2022

Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering

por Ling, Chen, Peabody, George L., Salvachúa, Davinia, Kim, Young-Mo, Kneucker, Colin M., Calvey, Christopher H., Monninger, Michela A., Munoz, Nathalie Munoz, Poirier, Brenton C., Ramirez, Kelsey J., St. John, Peter C., Woodworth, Sean P., Magnuson, Jon K., Burnum-Johnson, Kristin E., Guss, Adam M., Johnson, Christopher W., Beckham, Gregg T.
Publicado 2022

Elucidating regulatory processes of intense physical activity by multi-omics analysis

por Nakayasu, Ernesto S., Gritsenko, Marina A., Kim, Young-Mo, Kyle, Jennifer E., Stratton, Kelly G., Nicora, Carrie D., Munoz, Nathalie, Navarro, Kathleen M., Claborne, Daniel, Gao, Yuqian, Weitz, Karl K., Paurus, Vanessa L., Bloodsworth, Kent J., Allen, Kelsey A., Bramer, Lisa M., Montes, Fernando, Clark, Kathleen A., Tietje, Grant, Teeguarden, Justin, Burnum-Johnson, Kristin E.
Publicado 2023

Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in Aspergillus pseudoterreus

por Pomraning, Kyle R., Dai, Ziyu, Munoz, Nathalie, Kim, Young-Mo, Gao, Yuqian, Deng, Shuang, Kim, Joonhoon, Hofstad, Beth A., Swita, Marie S., Lemmon, Teresa, Collett, James R., Panisko, Ellen A., Webb-Robertson, Bobbie-Jo M., Zucker, Jeremy D., Nicora, Carrie D., De Paoli, Henrique, Baker, Scott E., Burnum-Johnson, Kristin E., Hillson, Nathan J., Magnuson, Jon K.
Publicado 2021

A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets

por Zamith-Miranda, Daniel, Heyman, Heino M., Burnet, Meagan C., Couvillion, Sneha P., Zheng, Xueyun, Munoz, Nathalie, Nelson, William C., Kyle, Jennifer E., Zink, Erika M., Weitz, Karl K., Bloodsworth, Kent J., Clair, Geremy, Zucker, Jeremy D., Teuton, Jeremy R., Payne, Samuel H., Kim, Young-Mo, Reyes Gil, Morayma, Baker, Erin S., Bredeweg, Erin L., Nosanchuk, Joshua D., Nakayasu, Ernesto S.
Publicado 2021

Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass

por Kirby, James, Geiselman, Gina M., Yaegashi, Junko, Kim, Joonhoon, Zhuang, Xun, Tran-Gyamfi, Mary Bao, Prahl, Jan-Philip, Sundstrom, Eric R., Gao, Yuqian, Munoz, Nathalie, Burnum-Johnson, Kristin E., Benites, Veronica T., Baidoo, Edward E. K., Fuhrmann, Anna, Seibel, Katharina, Webb-Robertson, Bobbie-Jo M., Zucker, Jeremy, Nicora, Carrie D., Tanjore, Deepti, Magnuson, Jon K., Skerker, Jeffrey M., Gladden, John M.
Publicado 2021

High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in Pseudomonas putida KT2440

por Gao, Yuqian, Fillmore, Thomas L., Munoz, Nathalie, Bentley, Gayle J., Johnson, Christopher W., Kim, Joonhoon, Meadows, Jamie A., Zucker, Jeremy D., Burnet, Meagan C., Lipton, Anna K., Bilbao, Aivett, Orton, Daniel J., Kim, Young-Mo, Moore, Ronald J., Robinson, Errol W., Baker, Scott E., Webb-Robertson, Bobbie-Jo M., Guss, Adam M., Gladden, John M., Beckham, Gregg T., Magnuson, Jon K., Burnum-Johnson, Kristin E.
Publicado 2020

PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements

por Bilbao, Aivett, Munoz, Nathalie, Kim, Joonhoon, Orton, Daniel J., Gao, Yuqian, Poorey, Kunal, Pomraning, Kyle R., Weitz, Karl, Burnet, Meagan, Nicora, Carrie D., Wilton, Rosemarie, Deng, Shuang, Dai, Ziyu, Oksen, Ethan, Gee, Aaron, Fasani, Rick A., Tsalenko, Anya, Tanjore, Deepti, Gardner, James, Smith, Richard D., Michener, Joshua K., Gladden, John M., Baker, Erin S., Petzold, Christopher J., Kim, Young-Mo, Apffel, Alex, Magnuson, Jon K., Burnum-Johnson, Kristin E.
Publicado 2023