miTALOS v2: Analyzing Tissue Specific microRNA Function

por Preusse, Martin, Theis, Fabian J., Mueller, Nikola S.
Publicado 2016

A modular framework for gene set analysis integrating multilevel omics data

por Sass, Steffen, Buettner, Florian, Mueller, Nikola S., Theis, Fabian J.
Publicado 2013

Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data

por Ocone, Andrea, Haghverdi, Laleh, Mueller, Nikola S., Theis, Fabian J.
Publicado 2015

netReg: network-regularized linear models for biological association studies

por Dirmeier, Simon, Fuchs, Christiane, Mueller, Nikola S, Theis, Fabian J
Publicado 2018

Single-cell RNA-seq denoising using a deep count autoencoder

por Eraslan, Gökcen, Simon, Lukas M., Mircea, Maria, Mueller, Nikola S., Theis, Fabian J.
Publicado 2019

MicroRNA-Target Network Inference and Local Network Enrichment Analysis Identify Two microRNA Clusters with Distinct Functions in Head and Neck Squamous Cell Carcinoma

por Sass, Steffen, Pitea, Adriana, Unger, Kristian, Hess, Julia, Mueller, Nikola S., Theis, Fabian J.
Publicado 2015

Network Embedding Across Multiple Tissues and Data Modalities Elucidates the Context of Host Factors Important for COVID-19 Infection

por Hu, Yue, Rehawi, Ghalia, Moyon, Lambert, Gerstner, Nathalie, Ogris, Christoph, Knauer-Arloth, Janine, Bittner, Florian, Marsico, Annalisa, Mueller, Nikola S.
Publicado 2022

Predicting liver regeneration following major resection

por Dehlke, Karolin, Krause, Linda, Tyufekchieva, Silvana, Murtha-Lemekhova, Anastasia, Mayer, Philipp, Vlasov, Artyom, Klingmüller, Ursula, Mueller, Nikola S., Hoffmann, Katrin
Publicado 2022

BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

por Uzbas, Fatma, Opperer, Florian, Sönmezer, Can, Shaposhnikov, Dmitry, Sass, Steffen, Krendl, Christian, Angerer, Philipp, Theis, Fabian J., Mueller, Nikola S., Drukker, Micha
Publicado 2019

Integrative Analysis of MicroRNA and mRNA Data Reveals an Orchestrated Function of MicroRNAs in Skeletal Myocyte Differentiation in Response to TNF-α or IGF1

por Meyer, Swanhild U., Sass, Steffen, Mueller, Nikola S., Krebs, Stefan, Bauersachs, Stefan, Kaiser, Sebastian, Blum, Helmut, Thirion, Christian, Krause, Sabine, Theis, Fabian J., Pfaffl, Michael W.
Publicado 2015

AURKA, DLGAP5, TPX2, KIF11 and CKAP5: Five specific mitosis-associated genes correlate with poor prognosis for non-small cell lung cancer patients

por Schneider, Marc A., Christopoulos, Petros, Muley, Thomas, Warth, Arne, Klingmueller, Ursula, Thomas, Michael, Herth, Felix J.F., Dienemann, Hendrik, Mueller, Nikola S., Theis, Fabian, Meister, Michael
Publicado 2017

A computational map of the human-SARS-CoV-2 protein–RNA interactome predicted at single-nucleotide resolution

por Horlacher, Marc, Oleshko, Svitlana, Hu, Yue, Ghanbari, Mahsa, Cantini, Giulia, Schinke, Patrick, Vergara, Ernesto Elorduy, Bittner, Florian, Mueller, Nikola S, Ohler, Uwe, Moyon, Lambert, Marsico, Annalisa
Publicado 2023

T102. AN INVESTIGATION OF SCHIZOPHRENIA-BIPOLAR SUBGROUPS WITH GENETIC AND PROGNOSTIC VALIDATION

por Dwyer, Dominic, Kalman, Janos, Budde, Monika, Heilbronner, Urs, Ruef, Anne, Anderson-Schmidt, Heike, Gade, Katrin, Mueller, Nikola, Kondofersky, Ivan, Papiol, Sergi, Falkai, Peter, Schulze, Thomas G, Koutsouleris, Nikolaos
Publicado 2018

Tolerance of repeated toxic injuries of murine livers is associated with steatosis and inflammation

por Hammad, Seddik, Ogris, Christoph, Othman, Amnah, Erdoesi, Pia, Schmidt-Heck, Wolfgang, Biermayer, Ina, Helm, Barbara, Gao, Yan, Piorońska, Weronika, Holland, Christian H., D’Alessandro, Lorenza A., de la Torre, Carolina, Sticht, Carsten, Al Aoua, Sherin, Theis, Fabian J., Bantel, Heike, Ebert, Matthias P., Klingmüller, Ursula, Hengstler, Jan G., Dooley, Steven, Mueller, Nikola S.
Publicado 2023

Exome sequencing of osteosarcoma reveals mutation signatures reminiscent of BRCA deficiency

por Kovac, Michal, Blattmann, Claudia, Ribi, Sebastian, Smida, Jan, Mueller, Nikola S., Engert, Florian, Castro-Giner, Francesc, Weischenfeldt, Joachim, Kovacova, Monika, Krieg, Andreas, Andreou, Dimosthenis, Tunn, Per-Ulf, Dürr, Hans Roland, Rechl, Hans, Schaser, Klaus-Dieter, Melcher, Ingo, Burdach, Stefan, Kulozik, Andreas, Specht, Katja, Heinimann, Karl, Fulda, Simone, Bielack, Stefan, Jundt, Gernot, Tomlinson, Ian, Korbel, Jan O., Nathrath, Michaela, Baumhoer, Daniel
Publicado 2015

DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning

por Arloth, Janine, Eraslan, Gökcen, Andlauer, Till F. M., Martins, Jade, Iurato, Stella, Kühnel, Brigitte, Waldenberger, Melanie, Frank, Josef, Gold, Ralf, Hemmer, Bernhard, Luessi, Felix, Nischwitz, Sandra, Paul, Friedemann, Wiendl, Heinz, Gieger, Christian, Heilmann-Heimbach, Stefanie, Kacprowski, Tim, Laudes, Matthias, Meitinger, Thomas, Peters, Annette, Rawal, Rajesh, Strauch, Konstantin, Lucae, Susanne, Müller-Myhsok, Bertram, Rietschel, Marcella, Theis, Fabian J., Binder, Elisabeth B., Mueller, Nikola S.
Publicado 2020

Model Based Targeting of IL-6-Induced Inflammatory Responses in Cultured Primary Hepatocytes to Improve Application of the JAK Inhibitor Ruxolitinib

por Sobotta, Svantje, Raue, Andreas, Huang, Xiaoyun, Vanlier, Joep, Jünger, Anja, Bohl, Sebastian, Albrecht, Ute, Hahnel, Maximilian J., Wolf, Stephanie, Mueller, Nikola S., D'Alessandro, Lorenza A., Mueller-Bohl, Stephanie, Boehm, Martin E., Lucarelli, Philippe, Bonefas, Sandra, Damm, Georg, Seehofer, Daniel, Lehmann, Wolf D., Rose-John, Stefan, van der Hoeven, Frank, Gretz, Norbert, Theis, Fabian J., Ehlting, Christian, Bode, Johannes G., Timmer, Jens, Schilling, Marcel, Klingmüller, Ursula
Publicado 2017