Determining Microbial Niche Breadth in the Environment for Better Ecosystem Fate Predictions

por Muller, Emilie E. L.
Publicado 2019

A hundred years of activated sludge: time for a rethink

por Sheik, Abdul R., Muller, Emilie E. L., Wilmes, Paul
Publicado 2014

Integrated omics for the identification of key functionalities in biological wastewater treatment microbial communities

por Narayanasamy, Shaman, Muller, Emilie E L, Sheik, Abdul R, Wilmes, Paul
Publicado 2015

A year of monitoring 20 mesophilic full-scale bioreactors reveals the existence of stable but different core microbiomes in bio-waste and wastewater anaerobic digestion systems

por Calusinska, Magdalena, Goux, Xavier, Fossépré, Marie, Muller, Emilie E. L., Wilmes, Paul, Delfosse, Philippe
Publicado 2018

Hopanoid-free Methylobacterium extorquens DM4 overproduces carotenoids and has widespread growth impairment

por Bradley, Alexander S., Swanson, Paige K., Muller, Emilie E. L., Bringel, Françoise, Caroll, Sean M., Pearson, Ann, Vuilleumier, Stéphane, Marx, Christopher J.
Publicado 2017

Challenges, Strategies, and Perspectives for Reference-Independent Longitudinal Multi-Omic Microbiome Studies

por Martínez Arbas, Susana, Busi, Susheel Bhanu, Queirós, Pedro, de Nies, Laura, Herold, Malte, May, Patrick, Wilmes, Paul, Muller, Emilie E. L., Narayanasamy, Shaman
Publicado 2021

Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

por Hugerth, Luisa W., Muller, Emilie E. L., Hu, Yue O. O., Lebrun, Laura A. M., Roume, Hugo, Lundin, Daniel, Wilmes, Paul, Andersson, Anders F.
Publicado 2014

Identification, Recovery, and Refinement of Hitherto Undescribed Population-Level Genomes from the Human Gastrointestinal Tract

por Laczny, Cedric C., Muller, Emilie E. L., Heintz-Buschart, Anna, Herold, Malte, Lebrun, Laura A., Hogan, Angela, May, Patrick, de Beaufort, Carine, Wilmes, Paul
Publicado 2016

IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

por Narayanasamy, Shaman, Jarosz, Yohan, Muller, Emilie E. L., Heintz-Buschart, Anna, Herold, Malte, Kaysen, Anne, Laczny, Cédric C., Pinel, Nicolás, May, Patrick, Wilmes, Paul
Publicado 2016

Expressed protein profile of a Tectomicrobium and other microbial symbionts in the marine sponge Aplysina aerophoba as evidenced by metaproteomics

por Chaib De Mares, Maryam, Jiménez, Diego Javier, Palladino, Giorgia, Gutleben, Johanna, Lebrun, Laura A., Muller, Emilie E. L., Wilmes, Paul, Sipkema, Detmer, van Elsas, Jan Dirk
Publicado 2018

First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

por Muller, Emilie E. L., Narayanasamy, Shaman, Zeimes, Myriam, Laczny, Cédric C., Lebrun, Laura A., Herold, Malte, Hicks, Nathan D., Gillece, John D., Schupp, James M., Keim, Paul, Wilmes, Paul
Publicado 2017

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life

por Wampach, Linda, Heintz-Buschart, Anna, Hogan, Angela, Muller, Emilie E. L., Narayanasamy, Shaman, Laczny, Cedric C., Hugerth, Luisa W., Bindl, Lutz, Bottu, Jean, Andersson, Anders F., de Beaufort, Carine, Wilmes, Paul
Publicado 2017

Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics

por Hayoun, Karim, Geersens, Emilie, Laczny, Cédric C., Halder, Rashi, Lázaro Sánchez, Carmen, Manna, Abhijit, Bringel, Françoise, Ryckelynck, Michaël, Wilmes, Paul, Muller, Emilie E. L., Alpha-Bazin, Béatrice, Armengaud, Jean, Vuilleumier, Stéphane
Publicado 2020

Genome Sequence of the Dichloromethane-Degrading Bacterium Hyphomicrobium sp. Strain GJ21

por Bringel, Françoise, Postema, Christiaan P., Mangenot, Sophie, Bibi-Triki, Sabrina, Chaignaud, Pauline, Farhan Ul Haque, Muhammad, Gruffaz, Christelle, Hermon, Louis, Louhichi, Yousra, Maucourt, Bruno, Muller, Emilie E. L., Nadalig, Thierry, Lajus, Aurélie, Rouy, Zoé, Médigue, Claudine, Barbe, Valérie, Janssen, Dick B., Vuilleumier, Stéphane
Publicado 2017

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

por Roume, Hugo, Heintz-Buschart, Anna, Muller, Emilie E L, May, Patrick, Satagopam, Venkata P, Laczny, Cédric C, Narayanasamy, Shaman, Lebrun, Laura A, Hoopmann, Michael R, Schupp, James M, Gillece, John D, Hicks, Nathan D, Engelthaler, David M, Sauter, Thomas, Keim, Paul S, Moritz, Robert L, Wilmes, Paul
Publicado 2015

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

por Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul
Publicado 2014

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

por Martínez Arbas, Susana, Narayanasamy, Shaman, Herold, Malte, Lebrun, Laura A., Hoopmann, Michael R., Li, Sujun, Lam, Tony J., Kunath, Benoît J., Hicks, Nathan D., Liu, Cindy M., Price, Lance B., Laczny, Cedric C., Gillece, John D., Schupp, James M., Keim, Paul S., Moritz, Robert L., Faust, Karoline, Tang, Haixu, Ye, Yuzhen, Skupin, Alexander, May, Patrick, Muller, Emilie E. L., Wilmes, Paul
Publicado 2020

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

por Herold, Malte, Martínez Arbas, Susana, Narayanasamy, Shaman, Sheik, Abdul R., Kleine-Borgmann, Luise A. K., Lebrun, Laura A., Kunath, Benoît J., Roume, Hugo, Bessarab, Irina, Williams, Rohan B. H., Gillece, John D., Schupp, James M., Keim, Paul S., Jäger, Christian, Hoopmann, Michael R., Moritz, Robert L., Ye, Yuzhen, Li, Sujun, Tang, Haixu, Heintz-Buschart, Anna, May, Patrick, Muller, Emilie E. L., Laczny, Cedric C., Wilmes, Paul
Publicado 2020