Structural Biology of Bacterial RNA Polymerase

por Murakami, Katsuhiko S.
Publicado 2015

Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression

por Murakami, Katsuhiko, Kojima, Toshio, Sakaki, Yoshiyuki
Publicado 2004

Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase

por Shin, Yeonoh, Hedglin, Mark, Murakami, Katsuhiko S
Publicado 2020

Two different classes of co-occurring motif pairs found by a novel visualization method in human promoter regions

por Murakami, Katsuhiko, Imanishi, Tadashi, Gojobori, Takashi, Nakai, Kenta
Publicado 2008

Biomarker discovery by integrated joint non-negative matrix factorization and pathway signature analyses

por Fujita, Naoya, Mizuarai, Shinji, Murakami, Katsuhiko, Nakai, Kenta
Publicado 2018

Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli

por Qayyum, M. Zuhaib, Molodtsov, Vadim, Renda, Andrew, Murakami, Katsuhiko S.
Publicado 2021

SARS-CoV-2 polyprotein substrate regulates the stepwise M(pro) cleavage reaction

por Narwal, Manju, Armache, Jean-Paul, Edwards, Thomas J., Murakami, Katsuhiko S.
Publicado 2023

Differential regulation by ppGpp versus pppGpp in Escherichia coli

por Mechold, Undine, Potrykus, Katarzyna, Murphy, Helen, Murakami, Katsuhiko S., Cashel, Michael
Publicado 2013

Region 3.2 of the σ factor controls the stability of rRNA promoter complexes and potentiates their repression by DksA

por Pupov, Danil, Petushkov, Ivan, Esyunina, Daria, Murakami, Katsuhiko S, Kulbachinskiy, Andrey
Publicado 2018

Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase

por Vishwakarma, Rishi K., Qayyum, M. Zuhaib, Babitzke, Paul, Murakami, Katsuhiko S.
Publicado 2023

MreA Functions in the Global Regulation of Methanogenic Pathways in Methanosarcina acetivorans

por Reichlen,, Matthew J., Vepachedu, Venkata R., Murakami, Katsuhiko S., Ferry, James G.
Publicado 2012

On the stability of stalled RNA polymerase and its removal by RapA

por Portman, James R, Qayyum, M Zuhaib, Murakami, Katsuhiko S, Strick, Terence R
Publicado 2022

Structural basis of ribosomal RNA transcription regulation

por Shin, Yeonoh, Qayyum, M. Zuhaib, Pupov, Danil, Esyunina, Daria, Kulbachinskiy, Andrey, Murakami, Katsuhiko S.
Publicado 2021

The X-ray crystal structure of the euryarchaeal RNA polymerase in an open clamp configuration

por Jun, Sung-Hoon, Hirata, Akira, Kanai, Tamotsu, Santangelo, Thomas J., Imanaka, Tadayuki, Murakami, Katsuhiko S.
Publicado 2014

The structure and activities of the archaeal transcription termination factor Eta detail vulnerabilities of the transcription elongation complex

por Marshall, Craig J., Qayyum, M. Zuhaib, Walker, Julie E., Murakami, Katsuhiko S., Santangelo, Thomas J.
Publicado 2022

Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis

por Gu, Huiqiong, Yoshinari, Shigeo, Ghosh, Raka, Ignatochkina, Anna V., Gollnick, Paul D., Murakami, Katsuhiko S., Ho, C. Kiong
Publicado 2016

Direct binding of TFEα opens DNA binding cleft of RNA polymerase

por Jun, Sung-Hoon, Hyun, Jaekyung, Cha, Jeong Seok, Kim, Hoyoung, Bartlett, Michael S., Cho, Hyun-Soo, Murakami, Katsuhiko S.
Publicado 2020

The mechanism of the nucleo-sugar selection by multi-subunit RNA polymerases

por Mäkinen, Janne J., Shin, Yeonoh, Vieras, Eeva, Virta, Pasi, Metsä-Ketelä, Mikko, Murakami, Katsuhiko S., Belogurov, Georgiy A.
Publicado 2021

G-compass: a web-based comparative genome browser between human and other vertebrate genomes

por Kawahara, Yoshihiro, Sakate, Ryuichi, Matsuya, Akihiro, Murakami, Katsuhiko, Sato, Yoshiharu, Zhang, Hao, Gojobori, Takashi, Itoh, Takeshi, Imanishi, Tadashi
Publicado 2009

PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactio...

por Kikugawa, Shingo, Nishikata, Kensaku, Murakami, Katsuhiko, Sato, Yoshiharu, Suzuki, Mami, Altaf-Ul-Amin, Md, Kanaya, Shigehiko, Imanishi, Tadashi
Publicado 2012