RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates

por Rajput, Bhanu, Murphy, Terence D., Pruitt, Kim D.
Publicado 2015

RefSeq curation and annotation of stop codon recoding in vertebrates

por Rajput, Bhanu, Pruitt, Kim D, Murphy, Terence D
Publicado 2019

Comparison of RefSeq protein-coding regions in human and vertebrate genomes

por Fong, Jessica H, Murphy, Terence D, Pruitt, Kim D
Publicado 2013

Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus, an Important Biocontrol Agent of Pest Tepritid Fruit Flies

por Geib, Scott M., Liang, Guang Hong, Murphy, Terence D., Sim, Sheina B.
Publicado 2017

RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse

por Farrell, Catherine M., Goldfarb, Tamara, Rangwala, Sanjida H., Astashyn, Alexander, Ermolaeva, Olga D., Hem, Vichet, Katz, Kenneth S., Kodali, Vamsi K., Ludwig, Frank, Wallin, Craig L., Pruitt, Kim D., Murphy, Terence D.
Publicado 2022

Assembly: a resource for assembled genomes at NCBI

por Kitts, Paul A., Church, Deanna M., Thibaud-Nissen, Françoise, Choi, Jinna, Hem, Vichet, Sapojnikov, Victor, Smith, Robert G., Tatusova, Tatiana, Xiang, Charlie, Zherikov, Andrey, DiCuccio, Michael, Murphy, Terence D., Pruitt, Kim D., Kimchi, Avi
Publicado 2016

Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome

por Jagannathan, Vidhya, Hitte, Christophe, Kidd, Jeffrey M., Masterson, Patrick, Murphy, Terence D., Emery, Sarah, Davis, Brian, Buckley, Reuben M., Liu, Yan-Hu, Zhang, Xiang-Quan, Leeb, Tosso, Zhang, Ya-Ping, Ostrander, Elaine A., Wang, Guo-Dong
Publicado 2021

Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity

por Low, Wai Yee, Tearle, Rick, Bickhart, Derek M., Rosen, Benjamin D., Kingan, Sarah B., Swale, Thomas, Thibaud-Nissen, Françoise, Murphy, Terence D., Young, Rachel, Lefevre, Lucas, Hume, David A., Collins, Andrew, Ajmone-Marsan, Paolo, Smith, Timothy P. L., Williams, John L.
Publicado 2019

Genome Sequencing of the Phytoseiid Predatory Mite Metaseiulus occidentalis Reveals Completely Atomized Hox Genes and Superdynamic Intron Evolution

por Hoy, Marjorie A., Waterhouse, Robert M., Wu, Ke, Estep, Alden S., Ioannidis, Panagiotis, Palmer, William J., Pomerantz, Aaron F., Simão, Felipe A., Thomas, Jainy, Jiggins, Francis M., Murphy, Terence D., Pritham, Ellen J., Robertson, Hugh M., Zdobnov, Evgeny M., Gibbs, Richard A., Richards, Stephen
Publicado 2016

Rapid and sensitive detection of genome contamination at scale with FCS-GX

por Astashyn, Alexander, Tvedte, Eric S., Sweeney, Deacon, Sapojnikov, Victor, Bouk, Nathan, Joukov, Victor, Mozes, Eyal, Strope, Pooja K., Sylla, Pape M., Wagner, Lukas, Bidwell, Shelby L., Clark, Karen, Davis, Emily W., Smith-White, Brian, Hlavina, Wratko, Pruitt, Kim D., Schneider, Valerie A., Murphy, Terence D.
Publicado 2023

Mouse genome annotation by the RefSeq project

por McGarvey, Kelly M., Goldfarb, Tamara, Cox, Eric, Farrell, Catherine M., Gupta, Tripti, Joardar, Vinita S., Kodali, Vamsi K., Murphy, Michael R., O’Leary, Nuala A., Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Webb, David, Wright, Mathew W., Murphy, Terence D., Pruitt, Kim D.
Publicado 2015

The status of the human gene catalogue

por Amaral, Paulo, Carbonell-Sala, Silvia, De La Vega, Francisco M., Faial, Tiago, Frankish, Adam, Gingeras, Thomas, Guigo, Roderic, Harrow, Jennifer L, Hatzigeorgiou, Artemis G., Johnson, Rory, Murphy, Terence D., Pertea, Mihaela, Pruitt, Kim D., Pujar, Shashikant, Takahashi, Hazuki, Ulitsky, Igor, Varabyou, Ales, Wells, Christine A., Yandell, Mark, Carninci, Piero, Salzberg, Steven L.
Publicado 2023

Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment

por Scott, Jeffrey G, Warren, Wesley C, Beukeboom, Leo W, Bopp, Daniel, Clark, Andrew G, Giers, Sarah D, Hediger, Monika, Jones, Andrew K, Kasai, Shinji, Leichter, Cheryl A, Li, Ming, Meisel, Richard P, Minx, Patrick, Murphy, Terence D, Nelson, David R, Reid, William R, Rinkevich, Frank D, Robertson, Hugh M, Sackton, Timothy B, Sattelle, David B, Thibaud-Nissen, Francoise, Tomlinson, Chad, van de Zande, Louis, Walden, Kimberly KO, Wilson, Richard K, Liu, Nannan
Publicado 2014

RefSeq: an update on mammalian reference sequences

por Pruitt, Kim D., Brown, Garth R., Hiatt, Susan M., Thibaud-Nissen, Françoise, Astashyn, Alexander, Ermolaeva, Olga, Farrell, Catherine M., Hart, Jennifer, Landrum, Melissa J., McGarvey, Kelly M., Murphy, Michael R., O’Leary, Nuala A., Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Shkeda, Andrei, Sun, Hanzhen, Tamez, Pamela, Tully, Raymond E., Wallin, Craig, Webb, David, Weber, Janet, Wu, Wendy, DiCuccio, Michael, Kitts, Paul, Maglott, Donna R., Murphy, Terence D., Ostell, James M.
Publicado 2014

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

por Schneider, Valerie A., Graves-Lindsay, Tina, Howe, Kerstin, Bouk, Nathan, Chen, Hsiu-Chuan, Kitts, Paul A., Murphy, Terence D., Pruitt, Kim D., Thibaud-Nissen, Françoise, Albracht, Derek, Fulton, Robert S., Kremitzki, Milinn, Magrini, Vincent, Markovic, Chris, McGrath, Sean, Steinberg, Karyn Meltz, Auger, Kate, Chow, William, Collins, Joanna, Harden, Glenn, Hubbard, Timothy, Pelan, Sarah, Simpson, Jared T., Threadgold, Glen, Torrance, James, Wood, Jonathan M., Clarke, Laura, Koren, Sergey, Boitano, Matthew, Peluso, Paul, Li, Heng, Chin, Chen-Shan, Phillippy, Adam M., Durbin, Richard, Wilson, Richard K., Flicek, Paul, Eichler, Evan E., Church, Deanna M.
Publicado 2017

A joint NCBI and EMBL-EBI transcript set for clinical genomics and research

por Morales, Joannella, Pujar, Shashikant, Loveland, Jane E., Astashyn, Alex, Bennett, Ruth, Berry, Andrew, Cox, Eric, Davidson, Claire, Ermolaeva, Olga, Farrell, Catherine M., Fatima, Reham, Gil, Laurent, Goldfarb, Tamara, Gonzalez, Jose M., Haddad, Diana, Hardy, Matthew, Hunt, Toby, Jackson, John, Joardar, Vinita S., Kay, Michael, Kodali, Vamsi K., McGarvey, Kelly M., McMahon, Aoife, Mudge, Jonathan M., Murphy, Daniel N., Murphy, Michael R., Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Thibaud-Nissen, Françoise, Threadgold, Glen, Vatsan, Anjana R., Wallin, Craig, Webb, David, Flicek, Paul, Birney, Ewan, Pruitt, Kim D., Frankish, Adam, Cunningham, Fiona, Murphy, Terence D.
Publicado 2022

The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

por Olafson, Pia U., Aksoy, Serap, Attardo, Geoffrey M., Buckmeier, Greta, Chen, Xiaoting, Coates, Craig J., Davis, Megan, Dykema, Justin, Emrich, Scott J., Friedrich, Markus, Holmes, Christopher J., Ioannidis, Panagiotis, Jansen, Evan N., Jennings, Emily C., Lawson, Daniel, Martinson, Ellen O., Maslen, Gareth L., Meisel, Richard P., Murphy, Terence D., Nayduch, Dana, Nelson, David R., Oyen, Kennan J., Raszick, Tyler J., Ribeiro, José M. C., Robertson, Hugh M., Rosendale, Andrew J., Sackton, Timothy B., Saelao, Perot, Swiger, Sonja L., Sze, Sing-Hoi, Tarone, Aaron M., Taylor, David B., Warren, Wesley C., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Wilson, Richard K., Zdobnov, Evgeny M., Benoit, Joshua B.
Publicado 2021

Publisher Correction: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control

por Olafson, Pia U., Aksoy, Serap, Attardo, Geoffrey M., Buckmeier, Greta, Chen, Xiaoting, Coates, Craig J., Davis, Megan, Dykema, Justin, Emrich, Scott J., Friedrich, Markus, Holmes, Christopher J., Ioannidis, Panagiotis, Jansen, Evan N., Jennings, Emily C., Lawson, Daniel, Martinson, Ellen O., Maslen, Gareth L., Meisel, Richard P., Murphy, Terence D., Nayduch, Dana, Nelson, David R., Oyen, Kennan J., Raszick, Tyler J., Ribeiro, José M. C., Robertson, Hugh M., Rosendale, Andrew J., Sackton, Timothy B., Saelao, Perot, Swiger, Sonja L., Sze, Sing-Hoi, Tarone, Aaron M., Taylor, David B., Warren, Wesley C., Waterhouse, Robert M., Weirauch, Matthew T., Werren, John H., Wilson, Richard K., Zdobnov, Evgeny M., Benoit, Joshua B.
Publicado 2021

A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats*

por de Jong, Tristan V, Pan, Yanchao, Rastas, Pasi, Munro, Daniel, Tutaj, Monika, Akil, Huda, Benner, Chris, Chen, Denghui, Chitre, Apurva S, Chow, William, Colonna, Vincenza, Dalgard, Clifton L, Demos, Wendy M, Doris, Peter A, Garrison, Erik, Geurts, Aron M, Gunturkun, Hakan M, Guryev, Victor, Hourlier, Thibaut, Howe, Kerstin, Huang, Jun, Kalbfleisch, Ted, Kim, Panjun, Li, Ling, Mahaffey, Spencer, Martin, Fergal J, Mohammadi, Pejman, Ozel, Ayse Bilge, Polesskaya, Oksana, Pravenec, Michal, Prins, Pjotr, Sebat, Jonathan, Smith, Jennifer R, Solberg Woods, Leah C, Tabakoff, Boris, Tracey, Alan, Uliano-Silva, Marcela, Villani, Flavia, Wang, Hongyang, Sharp, Burt M, Telese, Francesca, Jiang, Zhihua, Saba, Laura, Wang, Xusheng, Murphy, Terence D, Palmer, Abraham A, Kwitek, Anne E, Dwinell, Melinda R, Williams, Robert W, Li, Jun Z, Chen, Hao
Publicado 2023

Finding the missing honey bee genes: lessons learned from a genome upgrade

por Elsik, Christine G, Worley, Kim C, Bennett, Anna K, Beye, Martin, Camara, Francisco, Childers, Christopher P, de Graaf, Dirk C, Debyser, Griet, Deng, Jixin, Devreese, Bart, Elhaik, Eran, Evans, Jay D, Foster, Leonard J, Graur, Dan, Guigo, Roderic, Hoff, Katharina Jasmin, Holder, Michael E, Hudson, Matthew E, Hunt, Greg J, Jiang, Huaiyang, Joshi, Vandita, Khetani, Radhika S, Kosarev, Peter, Kovar, Christie L, Ma, Jian, Maleszka, Ryszard, Moritz, Robin F A, Munoz-Torres, Monica C, Murphy, Terence D, Muzny, Donna M, Newsham, Irene F, Reese, Justin T, Robertson, Hugh M, Robinson, Gene E, Rueppell, Olav, Solovyev, Victor, Stanke, Mario, Stolle, Eckart, Tsuruda, Jennifer M, Vaerenbergh, Matthias Van, Waterhouse, Robert M, Weaver, Daniel B, Whitfield, Charles W, Wu, Yuanqing, Zdobnov, Evgeny M, Zhang, Lan, Zhu, Dianhui, Gibbs, Richard A
Publicado 2014