Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo

por Aydin, Zafer, Murray, John I, Waterston, Robert H, Noble, William S
Publicado 2010

Efficient Single-Cell Transgene Induction in Caenorhabditis elegans Using a Pulsed Infrared Laser

por Churgin, Matthew A., He, Liping, Murray, John I., Fang-Yen, Christopher
Publicado 2013

Young transposable elements rewired gene regulatory networks in human and chimpanzee hippocampal intermediate progenitors

por Patoori, Sruti, Barnada, Samantha M., Large, Christopher, Murray, John I., Trizzino, Marco
Publicado 2022

AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis

por Boyle, Thomas J, Bao, Zhirong, Murray, John I, Araya, Carlos L, Waterston, Robert H
Publicado 2006

A Negative Regulatory Loop between MicroRNA and Hox Gene Controls Posterior Identities in Caenorhabditis elegans

por Zhao, Zhongying, Boyle, Thomas J., Liu, Zongzhi, Murray, John I., Wood, William B., Waterston, Robert H.
Publicado 2010

ngn-1/neurogenin Activates Transcription of Multiple Terminal Selector Transcription Factors in the Caenorhabditis elegans Nervous System

por Christensen, Elyse L., Beasley, Alexandra, Radchuk, Jessica, Mielko, Zachery E., Preston, Elicia, Stuckett, Sidney, Murray, John I., Hudson, Martin L.
Publicado 2020

The proprotein convertase BLI-4 promotes collagen secretion during assembly of the Caenorhabditis elegans cuticle

por Birnbaum, Susanna K., Cohen, Jennifer D., Belfi, Alexandra, Murray, John I., Adams, Jennifer R.G., Chisholm, Andrew D., Sundaram, Meera V.
Publicado 2023

The proprotein convertase BLI-4 promotes collagen secretion prior to assembly of the Caenorhabditis elegans cuticle

por Birnbaum, Susanna K., Cohen, Jennifer D., Belfi, Alexandra, Murray, John I., Adams, Jennifer R. G., Chisholm, Andrew D., Sundaram, Meera V.
Publicado 2023

SAVER: Gene expression recovery for single-cell RNA sequencing

por Huang, Mo, Wang, Jingshu, Torre, Eduardo, Dueck, Hannah, Shaffer, Sydney, Bonasio, Roberto, Murray, John I., Raj, Arjun, Li, Mingyao, Zhang, Nancy R.
Publicado 2018

Regulatory analysis of the C. elegans genome with spatiotemporal resolution

por Araya, Carlos L., Kawli, Trupti, Kundaje, Anshul, Jiang, Lixia, Wu, Beijing, Vafeados, Dionne, Terrell, Robert, Weissdepp, Peter, Gevirtzman, Louis, Mace, Daniel, Niu, Wei, Boyle, Alan P., Xie, Dan, Ma, Lijia, Murray, John I., Reinke, Valerie, Waterston, Robert H., Snyder, Michael
Publicado 2014

Genome-Wide Identification of Binding Sites Defines Distinct Functions for Caenorhabditis elegans PHA-4/FOXA in Development and Environmental Response

por Zhong, Mei, Niu, Wei, Lu, Zhi John, Sarov, Mihail, Murray, John I., Janette, Judith, Raha, Debasish, Sheaffer, Karyn L., Lam, Hugo Y. K., Preston, Elicia, Slightham, Cindie, Hillier, LaDeana W., Brock, Trisha, Agarwal, Ashish, Auerbach, Raymond, Hyman, Anthony A., Gerstein, Mark, Mango, Susan E., Kim, Stuart K., Waterston, Robert H., Reinke, Valerie, Snyder, Michael
Publicado 2010