Discovering General Multidimensional Associations

por Murrell, Ben, Murrell, Daniel, Murrell, Hugh
Publicado 2016

On the Validity of Evolutionary Models with Site-Specific Parameters

por Scheffler, Konrad, Murrell, Ben, Kosakovsky Pond, Sergei L.
Publicado 2014

RDP4: Detection and analysis of recombination patterns in virus genomes

por Martin, Darren P., Murrell, Ben, Golden, Michael, Khoosal, Arjun, Muhire, Brejnev
Publicado 2015

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

por Murrell, Ben, de Oliveira, Tulio, Seebregts, Chris, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Publicado 2012

Detecting Individual Sites Subject to Episodic Diversifying Selection

por Murrell, Ben, Wertheim, Joel O., Moola, Sasha, Weighill, Thomas, Scheffler, Konrad, Kosakovsky Pond, Sergei L.
Publicado 2012

Assigning and visualizing germline genes in antibody repertoires

por Frost, Simon D. W., Murrell, Ben, Hossain, A. S. Md. Mukarram, Silverman, Gregg J., Pond, Sergei L. Kosakovsky
Publicado 2015

Maintenance and reappearance of extremely divergent intra-host HIV-1 variants

por Wertheim, Joel O, Oster, Alexandra M, Murrell, Ben, Saduvala, Neeraja, Heneine, Walid, Switzer, William M, Johnson, Jeffrey A
Publicado 2018

DNA-launched RNA replicon vaccines induce potent anti-SARS-CoV-2 immune responses in mice

por Szurgot, Inga, Hanke, Leo, Sheward, Daniel J., Vidakovics, Laura Perez, Murrell, Ben, McInerney, Gerald M., Liljeström, Peter
Publicado 2021

Picomolar SARS-CoV-2 Neutralization Using Multi-Arm PEG Nanobody Constructs

por Moliner-Morro, Ainhoa, J. Sheward, Daniel, Karl, Vivien, Perez Vidakovics, Laura, Murrell, Ben, McInerney, Gerald M., Hanke, Leo
Publicado 2020

RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets

por Martin, Darren P, Varsani, Arvind, Roumagnac, Philippe, Botha, Gerrit, Maslamoney, Suresh, Schwab, Tiana, Kelz, Zena, Kumar, Venkatesh, Murrell, Ben
Publicado 2020

HIV Coinfection Provides Insights for the Design of Vaccine Cocktails to Elicit Broadly Neutralizing Antibodies

por Sheward, Daniel J., Hermanus, Tandile, Murrell, Ben, Garrett, Nigel, Abdool Karim, Salim S., Morris, Lynn, Moore, Penny L., Williamson, Carolyn
Publicado 2022

Hepatitis C virus genotype 1 and 2 recombinant genomes and the phylogeographic history of the 2k/1b lineage

por Hostager, Reilly, Ragonnet-Cronin, Manon, Murrell, Ben, Hedskog, Charlotte, Osinusi, Anu, Susser, Simone, Sarrazin, Christoph, Svarovskaia, Evguenia, Wertheim, Joel O
Publicado 2019

Non-Negative Matrix Factorization for Learning Alignment-Specific Models of Protein Evolution

por Murrell, Ben, Weighill, Thomas, Buys, Jan, Ketteringham, Robert, Moola, Sasha, Benade, Gerdus, du Buisson, Lise, Kaliski, Daniel, Hands, Tristan, Scheffler, Konrad
Publicado 2011

Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons

por Eren, Kemal, Weaver, Steven, Ketteringham, Robert, Valentyn, Morné, Laird Smith, Melissa, Kumar, Venkatesh, Mohan, Sanjay, Kosakovsky Pond, Sergei L., Murrell, Ben
Publicado 2018

Frequent use of IGHV3-30-3 in SARS-CoV-2 neutralizing antibody responses

por Pushparaj, Pradeepa, Nicoletto, Andrea, Castro Dopico, Xaquin, Sheward, Daniel J., Kim, Sungyong, Ekström, Simon, Murrell, Ben, Corcoran, Martin, Karlsson Hedestam, Gunilla B.
Publicado 2023

Optimized SMRT-UMI protocol produces highly accurate sequence datasets from diverse populations – application to HIV-1 quasispecies

por Westfall, Dylan H., Deng, Wenjie, Pankow, Alec, Murrell, Hugh, Chen, Lennie, Zhao, Hong, Williamson, Carolyn, Rolland, Morgane, Murrell, Ben, Mullins, James I.
Publicado 2023

A Multiparametric and High-Throughput Platform for Host–Virus Binding Screens

por Schlegel, Jan, Porebski, Bartlomiej, Andronico, Luca, Hanke, Leo, Edwards, Steven, Brismar, Hjalmar, Murrell, Ben, McInerney, Gerald M., Fernandez-Capetillo, Oscar, Sezgin, Erdinc
Publicado 2023

Silver nanoparticles with excellent biocompatibility block pseudotyped SARS-CoV-2 in the presence of lung surfactant

por Gupta, Govind, Hamawandi, Bejan, Sheward, Daniel J., Murrell, Ben, Hanke, Leo, McInerney, Gerald, Blosi, Magda, Costa, Anna L., Toprak, Muhammet S., Fadeel, Bengt
Publicado 2022

Phenotypic characterization of single CD4+ T cells harboring genetically intact and inducible HIV genomes

por Dufour, Caroline, Richard, Corentin, Pardons, Marion, Massanella, Marta, Ackaoui, Antoine, Murrell, Ben, Routy, Bertrand, Thomas, Réjean, Routy, Jean-Pierre, Fromentin, Rémi, Chomont, Nicolas
Publicado 2023

IDEPI: Rapid Prediction of HIV-1 Antibody Epitopes and Other Phenotypic Features from Sequence Data Using a Flexible Machine Learning Platform

por Hepler, N. Lance, Scheffler, Konrad, Weaver, Steven, Murrell, Ben, Richman, Douglas D., Burton, Dennis R., Poignard, Pascal, Smith, Davey M., Kosakovsky Pond, Sergei L.
Publicado 2014