Editorial for Special Issue: Metaproteomics

por Seifert, Jana, Muth, Thilo
Publicado 2019

PepGM: a probabilistic graphical model for taxonomic inference of viral proteome samples with associated confidence scores

por Holstein, Tanja, Kistner, Franziska, Martens, Lennart, Muth, Thilo
Publicado 2023

Mistle: bringing spectral library predictions to metaproteomics with an efficient search index

por Nowatzky, Yannek, Benner, Philipp, Reinert, Knut, Muth, Thilo
Publicado 2023

Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly

por Beslic, Denis, Tscheuschner, Georg, Renard, Bernhard Y, Weller, Michael G, Muth, Thilo
Publicado 2022

The importance of graph databases and graph learning for clinical applications

por Walke, Daniel, Micheel, Daniel, Schallert, Kay, Muth, Thilo, Broneske, David, Saake, Gunter, Heyer, Robert
Publicado 2023

DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass Spectra

por Muth, Thilo, Weilnböck, Lisa, Rapp, Erdmann, Huber, Christian G., Martens, Lennart, Vaudel, Marc, Barsnes, Harald
Publicado 2013

MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go

por Muth, Thilo, Kohrs, Fabian, Heyer, Robert, Benndorf, Dirk, Rapp, Erdmann, Reichl, Udo, Martens, Lennart, Renard, Bernhard Y.
Publicado 2017

Purple: A Computational Workflow for Strategic Selection of Peptides for Viral Diagnostics Using MS-Based Targeted Proteomics

por Lechner, Johanna, Hartkopf, Felix, Hiort, Pauline, Nitsche, Andreas, Grossegesse, Marica, Doellinger, Joerg, Renard, Bernhard Y., Muth, Thilo
Publicado 2019

Tracking changes in adaptation to suspension growth for MDCK cells: cell growth correlates with levels of metabolites, enzymes and proteins

por Pech, Sabine, Rehberg, Markus, Janke, Robert, Benndorf, Dirk, Genzel, Yvonne, Muth, Thilo, Sickmann, Albert, Rapp, Erdmann, Reichl, Udo
Publicado 2021

gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms

por Muñoz-Benavent, Maria, Hartkopf, Felix, Van Den Bossche, Tim, Piro, Vitor C, García-Ferris, Carlos, Latorre, Amparo, Renard, Bernhard Y, Muth, Thilo
Publicado 2020

gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms

por Muñoz-Benavent, Maria, Hartkopf, Felix, Van Den Bossche, Tim, Piro, Vitor C, García-Ferris, Carlos, Latorre, Amparo, Renard, Bernhard Y, Muth, Thilo
Publicado 2020

The impact of sequence database choice on metaproteomic results in gut microbiota studies

por Tanca, Alessandro, Palomba, Antonio, Fraumene, Cristina, Pagnozzi, Daniela, Manghina, Valeria, Deligios, Massimo, Muth, Thilo, Rapp, Erdmann, Martens, Lennart, Addis, Maria Filippa, Uzzau, Sergio
Publicado 2016

Metaproteogenomic analysis of saliva samples from Parkinson’s disease patients with cognitive impairment

por Arıkan, Muzaffer, Demir, Tuğçe Kahraman, Yıldız, Zeynep, Nalbantoğlu, Özkan Ufuk, Korkmaz, Nur Damla, Yılmaz, Nesrin H., Şen, Aysu, Özcan, Mutlu, Muth, Thilo, Hanoğlu, Lütfü, Yıldırım, Süleyman
Publicado 2023

A Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer

por Heyer, Robert, Schallert, Kay, Büdel, Anja, Zoun, Roman, Dorl, Sebastian, Behne, Alexander, Kohrs, Fabian, Püttker, Sebastian, Siewert, Corina, Muth, Thilo, Saake, Gunter, Reichl, Udo, Benndorf, Dirk
Publicado 2019

MALDI-TOF-MS-Based Identification of Monoclonal Murine Anti-SARS-CoV-2 Antibodies within One Hour

por Tscheuschner, Georg, Kaiser, Melanie N., Lisec, Jan, Beslic, Denis, Muth, Thilo, Krüger, Maren, Mages, Hans Werner, Dorner, Brigitte G., Knospe, Julia, Schenk, Jörg A., Sellrie, Frank, Weller, Michael G.
Publicado 2022

Survey of metaproteomics software tools for functional microbiome analysis

por Sajulga, Ray, Easterly, Caleb, Riffle, Michael, Mesuere, Bart, Muth, Thilo, Mehta, Subina, Kumar, Praveen, Johnson, James, Gruening, Bjoern Andreas, Schiebenhoefer, Henning, Kolmeder, Carolin A., Fuchs, Stephan, Nunn, Brook L., Rudney, Joel, Griffin, Timothy J., Jagtap, Pratik D.
Publicado 2020

Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework

por Blank, Clemens, Easterly, Caleb, Gruening, Bjoern, Johnson, James, Kolmeder, Carolin A., Kumar, Praveen, May, Damon, Mehta, Subina, Mesuere, Bart, Brown, Zachary, Elias, Joshua E., Hervey, W. Judson, McGowan, Thomas, Muth, Thilo, Nunn, Brook L., Rudney, Joel, Tanca, Alessandro, Griffin, Timothy J., Jagtap, Pratik D.
Publicado 2018

The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes

por Van Den Bossche, Tim, Arntzen, Magnus Ø., Becher, Dörte, Benndorf, Dirk, Eijsink, Vincent G. H., Henry, Céline, Jagtap, Pratik D., Jehmlich, Nico, Juste, Catherine, Kunath, Benoit J., Mesuere, Bart, Muth, Thilo, Pope, Phillip B., Seifert, Jana, Tanca, Alessandro, Uzzau, Sergio, Wilmes, Paul, Hettich, Robert L., Armengaud, Jean
Publicado 2021

Comparative Performance of Four Methods for High-throughput Glycosylation Analysis of Immunoglobulin G in Genetic and Epidemiological Research

por Huffman, Jennifer E., Pučić-Baković, Maja, Klarić, Lucija, Hennig, René, Selman, Maurice H. J., Vučković, Frano, Novokmet, Mislav, Krištić, Jasminka, Borowiak, Matthias, Muth, Thilo, Polašek, Ozren, Razdorov, Genadij, Gornik, Olga, Plomp, Rosina, Theodoratou, Evropi, Wright, Alan F., Rudan, Igor, Hayward, Caroline, Campbell, Harry, Deelder, André M., Reichl, Udo, Aulchenko, Yurii S., Rapp, Erdmann, Wuhrer, Manfred, Lauc, Gordan
Publicado 2014

An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action

por Anzt, Hartwig, Bach, Felix, Druskat, Stephan, Löffler, Frank, Loewe, Axel, Renard, Bernhard Y., Seemann, Gunnar, Struck, Alexander, Achhammer, Elke, Aggarwal, Piush, Appel, Franziska, Bader, Michael, Brusch, Lutz, Busse, Christian, Chourdakis, Gerasimos, Dabrowski, Piotr Wojciech, Ebert, Peter, Flemisch, Bernd, Friedl, Sven, Fritzsch, Bernadette, Funk, Maximilian D., Gast, Volker, Goth, Florian, Grad, Jean-Noël, Hegewald, Jan, Hermann, Sibylle, Hohmann, Florian, Janosch, Stephan, Kutra, Dominik, Linxweiler, Jan, Muth, Thilo, Peters-Kottig, Wolfgang, Rack, Fabian, Raters, Fabian H.C., Rave, Stephan, Reina, Guido, Reißig, Malte, Ropinski, Timo, Schaarschmidt, Joerg, Seibold, Heidi, Thiele, Jan P., Uekermann, Benjamin, Unger, Stefan, Weeber, Rudolf
Publicado 2021