Accelerating read mapping with FastHASH

por Xin, Hongyi, Lee, Donghyuk, Hormozdiari, Farhad, Yedkar, Samihan, Mutlu, Onur, Alkan, Can
Publicado 2013

COVIDHunter: COVID-19 Pandemic Wave Prediction and Mitigation via Seasonality Aware Modeling

por Alser, Mohammed, Kim, Jeremie S., Almadhoun Alserr, Nour, Tell, Stefan W., Mutlu, Onur
Publicado 2022

Training and Profiling a Pediatric Facial Expression Classifier for Children on Mobile Devices: Machine Learning Study

por Banerjee, Agnik, Mutlu, Onur Cezmi, Kline, Aaron, Surabhi, Saimourya, Washington, Peter, Wall, Dennis Paul
Publicado 2023

A framework for high-throughput sequence alignment using real processing-in-memory systems

por Diab, Safaa, Nassereldine, Amir, Alser, Mohammed, Gómez Luna, Juan, Mutlu, Onur, El Hajj, Izzat
Publicado 2023

Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs

por Lindegger, Joël, Senol Cali, Damla, Alser, Mohammed, Gómez-Luna, Juan, Ghiasi, Nika Mansouri, Mutlu, Onur
Publicado 2023

The association between glycemia and clinical outcomes in patients with diabetes mellitus and pulmonary thromboembolism

por Polat, Gülru, Güçsav, Mutlu Onur, Özdemir, Özer, Türk, Merve Ayik, Unat, Damla Serçe, Tatar, Dursun
Publicado 2023

RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes

por Firtina, Can, Mansouri Ghiasi, Nika, Lindegger, Joel, Singh, Gagandeep, Cavlak, Meryem Banu, Mao, Haiyu, Mutlu, Onur
Publicado 2023

From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures

por Alser, Mohammed, Lindegger, Joel, Firtina, Can, Almadhoun, Nour, Mao, Haiyu, Singh, Gagandeep, Gomez-Luna, Juan, Mutlu, Onur
Publicado 2022

Machine learning models using mobile game play accurately classify children with autism

por Deveau, Nicholas, Washington, Peter, Leblanc, Emilie, Husic, Arman, Dunlap, Kaitlyn, Penev, Yordan, Kline, Aaron, Mutlu, Onur Cezmi, Wall, Dennis P.
Publicado 2022

GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies

por Kim, Jeremie S., Senol Cali, Damla, Xin, Hongyi, Lee, Donghyuk, Ghose, Saugata, Alser, Mohammed, Hassan, Hasan, Ergin, Oguz, Alkan, Can, Mutlu, Onur
Publicado 2018

BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis

por Firtina, Can, Park, Jisung, Alser, Mohammed, Kim, Jeremie S, Cali, Damla Senol, Shahroodi, Taha, Ghiasi, Nika Mansouri, Singh, Gagandeep, Kanellopoulos, Konstantinos, Alkan, Can, Mutlu, Onur
Publicado 2023

BioDynaMo: a modular platform for high-performance agent-based simulation

por Breitwieser, Lukas, Hesam, Ahmad, de Montigny, Jean, Vavourakis, Vasileios, Iosif, Alexandros, Jennings, Jack, Kaiser, Marcus, Manca, Marco, Di Meglio, Alberto, Al-Ars, Zaid, Rademakers, Fons, Mutlu, Onur, Bauer, Roman
Publicado 2020

BioDynaMo: a modular platform for high-performance agent-based simulation

por Breitwieser, Lukas, Hesam, Ahmad, de Montigny, Jean, Vavourakis, Vasileios, Iosif, Alexandros, Jennings, Jack, Kaiser, Marcus, Manca, Marco, Di Meglio, Alberto, Al-Ars, Zaid, Rademakers, Fons, Mutlu, Onur, Bauer, Roman
Publicado 2021

Personalized Copy-Number and Segmental Duplication Maps using Next-Generation Sequencing

por Alkan, Can, Kidd, Jeffrey M., Marques-Bonet, Tomas, Aksay, Gozde, Antonacci, Francesca, Hormozdiari, Fereydoun, Kitzman, Jacob O., Baker, Carl, Malig, Maika, Mutlu, Onur, Sahinalp, S. Cenk, Gibbs, Richard A., Eichler, Evan E.
Publicado 2009

Technology dictates algorithms: recent developments in read alignment

por Alser, Mohammed, Rotman, Jeremy, Deshpande, Dhrithi, Taraszka, Kodi, Shi, Huwenbo, Baykal, Pelin Icer, Yang, Harry Taegyun, Xue, Victor, Knyazev, Sergey, Singer, Benjamin D., Balliu, Brunilda, Koslicki, David, Skums, Pavel, Zelikovsky, Alex, Alkan, Can, Mutlu, Onur, Mangul, Serghei
Publicado 2021

Latest Developments in Adapting Deep Learning for Assessing TAVR Procedures and Outcomes

por Tahir, Anas M., Mutlu, Onur, Bensaali, Faycal, Ward, Rabab, Ghareeb, Abdel Naser, Helmy, Sherif M. H. A., Othman, Khaled T., Al-Hashemi, Mohammed A., Abujalala, Salem, Chowdhury, Muhammad E. H., Alnabti, A.Rahman D. M. H., Yalcin, Huseyin C.
Publicado 2023

Improved Digital Therapy for Developmental Pediatrics Using Domain-Specific Artificial Intelligence: Machine Learning Study

por Washington, Peter, Kalantarian, Haik, Kent, John, Husic, Arman, Kline, Aaron, Leblanc, Emilie, Hou, Cathy, Mutlu, Onur Cezmi, Dunlap, Kaitlyn, Penev, Yordan, Varma, Maya, Stockham, Nate Tyler, Chrisman, Brianna, Paskov, Kelley, Sun, Min Woo, Jung, Jae-Yoon, Voss, Catalin, Haber, Nick, Wall, Dennis Paul
Publicado 2022