Incomplete erasure of histone marks during epigenetic reprogramming in medaka early development

por Fukushima, Hiroto S., Takeda, Hiroyuki, Nakamura, Ryohei
Publicado 2023

Targeted in vivo epigenome editing of H3K27me3

por Fukushima, Hiroto S., Takeda, Hiroyuki, Nakamura, Ryohei
Publicado 2019

Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts

por Nakamura, Ryohei, Uno, Ayako, Kumagai, Masahiko, Morishita, Shinichi, Takeda, Hiroyuki
Publicado 2017

Epigenetically distinct synaptic architecture in clonal compartments in the teleostean dorsal pallium

por Isoe, Yasuko, Nakamura, Ryohei, Nonaka, Shigenori, Kamei, Yasuhiro, Okuyama, Teruhiro, Yamamoto, Naoyuki, Takeuchi, Hideaki, Takeda, Hiroyuki
Publicado 2023

Unlinking the methylome pattern from nucleotide sequence, revealed by large-scale in vivo genome engineering and methylome editing in medaka fish

por Cheung, Napo K. M., Nakamura, Ryohei, Uno, Ayako, Kumagai, Masahiko, Fukushima, Hiroto S., Morishita, Shinichi, Takeda, Hiroyuki
Publicado 2017

Assessing Cell-to-Cell DNA Methylation Variability on Individual Long Reads

por Qu, Wei, Tsukahara, Tatsuya, Nakamura, Ryohei, Yurino, Hideaki, Hashimoto, Shin-ichi, Tsuji, Shoji, Takeda, Hiroyuki, Morishita, Shinichi
Publicado 2016

Wnt11 acts on dermomyotome cells to guide epaxial myotome morphogenesis

por Heilig, Ann Kathrin, Nakamura, Ryohei, Shimada, Atsuko, Hashimoto, Yuka, Nakamura, Yuta, Wittbrodt, Joachim, Takeda, Hiroyuki, Kawanishi, Toru
Publicado 2022

A Nearly Complete Genome of Ciona intestinalis Type A (C. robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona

por Satou, Yutaka, Nakamura, Ryohei, Yu, Deli, Yoshida, Reiko, Hamada, Mayuko, Fujie, Manabu, Hisata, Kanako, Takeda, Hiroyuki, Satoh, Noriyuki
Publicado 2019

The Effects of Frequent Electroejaculation on the Semen Characteristics of a Captive Siberian Tiger (Panthera tigris altaica)

por FUKUI, Daisuke, NAGANO, Masashi, NAKAMURA, Ryohei, BANDO, Gen, NAKATA, Shinichi, KOSUGE, Masao, SAKAMOTO, Hideyuki, MATSUI, Motozumi, YANAGAWA, Yojiro, TAKAHASHI, Yoshiyuki
Publicado 2013

Timing of Puberty and Its Relationship with Body Growth and Season in Male Raccoons (Procyon lotor) in Hokkaido

por OKUYAMA, Minami W., SHIMOZURU, Michito, ABE, Go, NAKAI, Mariko, SASHIKA, Mariko, SHIMADA, Ken-Ichiro, TAKAHASHI, Nobuhiro, FUKUI, Daisuke, NAKAMURA, Ryohei, TSUBOTA, Toshio
Publicado 2013

Centromere evolution and CpG methylation during vertebrate speciation

por Ichikawa, Kazuki, Tomioka, Shingo, Suzuki, Yuta, Nakamura, Ryohei, Doi, Koichiro, Yoshimura, Jun, Kumagai, Masahiko, Inoue, Yusuke, Uchida, Yui, Irie, Naoki, Takeda, Hiroyuki, Morishita, Shinich
Publicado 2017

Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species

por Nakatani, Yoichiro, Mello, Cecilia C., Hashimoto, Shin-ichi, Shimada, Atsuko, Nakamura, Ryohei, Tsukahara, Tatsuya, Qu, Wei, Yoshimura, Jun, Suzuki, Yutaka, Sugano, Sumio, Takeda, Hiroyuki, Fire, Andrew, Morishita, Shinichi
Publicado 2015

Methylome inheritance and enhancer dememorization reset an epigenetic gate safeguarding embryonic programs

por Wu, Xiaotong, Zhang, Hongmei, Zhang, Bingjie, Zhang, Yu, Wang, Qiuyan, Shen, Weimin, Wu, Xi, Li, Lijia, Xia, Weikun, Nakamura, Ryohei, Liu, Bofeng, Liu, Feng, Takeda, Hiroyuki, Meng, Anming, Xie, Wei
Publicado 2021

CTCF looping is established during gastrulation in medaka embryos

por Nakamura, Ryohei, Motai, Yuichi, Kumagai, Masahiko, Wike, Candice L., Nishiyama, Haruyo, Nakatani, Yoichiro, Durand, Neva C., Kondo, Kaori, Kondo, Takashi, Tsukahara, Tatsuya, Shimada, Atsuko, Cairns, Bradley R., Aiden, Erez Lieberman, Morishita, Shinichi, Takeda, Hiroyuki
Publicado 2021

Chromatin architecture transitions from zebrafish sperm through early embryogenesis

por Wike, Candice L., Guo, Yixuan, Tan, Mengyao, Nakamura, Ryohei, Shaw, Dana Klatt, Díaz, Noelia, Whittaker-Tademy, Aneasha F., Durand, Neva C., Aiden, Erez Lieberman, Vaquerizas, Juan M., Grunwald, David, Takeda, Hiroyuki, Cairns, Bradley R.
Publicado 2021

Mobility of the forearm skeleton in the Asiatic black (Ursus thibetanus), brown (U. arctos) and polar (U. maritimus) bears

por AMAIKE, Hayato, SASAKI, Motoki, TSUZUKI, Nao, KAYANO, Mitsunori, OISHI, Motoharu, YAMADA, Kazutaka, ENDO, Hideki, ANEZAKI, Tomoko, MATSUMOTO, Naoya, NAKASHITA, Rumiko, KUROE, Misako, TARU, Hajime, BANDO, Gen, IKETANI, Yuko, NAKAMURA, Ryohei, SATO, Nobutaka, FUKUI, Daisuke, KITAMURA, Nobuo
Publicado 2021

Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals

por Mulholland, Christopher B., Nishiyama, Atsuya, Ryan, Joel, Nakamura, Ryohei, Yiğit, Merve, Glück, Ivo M., Trummer, Carina, Qin, Weihua, Bartoschek, Michael D., Traube, Franziska R., Parsa, Edris, Ugur, Enes, Modic, Miha, Acharya, Aishwarya, Stolz, Paul, Ziegenhain, Christoph, Wierer, Michael, Enard, Wolfgang, Carell, Thomas, Lamb, Don C., Takeda, Hiroyuki, Nakanashi, Makoto, Bultmann, Sebastian, Leonhardt, Heinrich
Publicado 2020

Author Correction: Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals

por Mulholland, Christopher B., Nishiyama, Atsuya, Ryan, Joel, Nakamura, Ryohei, Yiğit, Merve, Glück, Ivo M., Trummer, Carina, Qin, Weihua, Bartoschek, Michael D., Traube, Franziska R., Parsa, Edris, Ugur, Enes, Modic, Miha, Acharya, Aishwarya, Stolz, Paul, Ziegenhain, Christoph, Wierer, Michael, Enard, Wolfgang, Carell, Thomas, Lamb, Don C., Takeda, Hiroyuki, Nakanishi, Makoto, Bultmann, Sebastian, Leonhardt, Heinrich
Publicado 2020