Clinical Utility of Unbiased Metagenomic Next-Generation Sequencing in Diagnosis of Acute Infectious Diseases: A Prospective Case Series

por Naccache, Samia N., Greninger, Alex, Samayoa, Erik, Miller, Steve, Chiu, Charles Y.
Publicado 2015

2563. Clinical Metagenomic Next-Generation Sequencing for Diagnosis of Meningitis and Encephalitis

por Wilson, Michael, Sample, Hannah, Zorn, Kelsey, Naccache, Samia N, Miller, Steve, Chiu, Charles Y
Publicado 2018

An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data

por Deng, Xutao, Naccache, Samia N., Ng, Terry, Federman, Scot, Li, Linlin, Chiu, Charles Y., Delwart, Eric L.
Publicado 2015

Comparison of Commercially Available and Laboratory-Developed Assays for In Vitro Detection of SARS-CoV-2 in Clinical Laboratories

por Lieberman, Joshua A., Pepper, Gregory, Naccache, Samia N., Huang, Meei-Li, Jerome, Keith R., Greninger, Alexander L.
Publicado 2020

The Genome Sequence of Lone Star Virus, a Highly Divergent Bunyavirus Found in the Amblyomma americanum Tick

por Swei, Andrea, Russell, Brandy J., Naccache, Samia N., Kabre, Beniwende, Veeraraghavan, Narayanan, Pilgard, Mark A., Johnson, Barbara J. B., Chiu, Charles Y.
Publicado 2013

Genomic Assays for Identification of Chikungunya Virus in Blood Donors, Puerto Rico, 2014

por Chiu, Charles Y., Bres, Vanessa, Yu, Guixia, Krysztof, David, Naccache, Samia N., Lee, Deanna, Pfeil, Jacob, Linnen, Jeffrey M., Stramer, Susan L.
Publicado 2015

Viral Surveillance in Serum Samples From Patients With Acute Liver Failure By Metagenomic Next-Generation Sequencing

por Somasekar, Sneha, Lee, Deanna, Rule, Jody, Naccache, Samia N, Stone, Mars, Busch, Michael P, Sanders, Corron, Lee, William M, Chiu, Charles Y
Publicado 2017

Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity

por Luk, Ka-Cheung, Berg, Michael G., Naccache, Samia N., Kabre, Beniwende, Federman, Scot, Mbanya, Dora, Kaptué, Lazare, Chiu, Charles Y., Brennan, Catherine A., Hackett, John
Publicado 2015

A novel bocavirus in canine liver

por Li, Linlin, Pesavento, Patricia A, Leutenegger, Christian M, Estrada, Marko, Coffey, Lark L, Naccache, Samia N, Samayoa, Erik, Chiu, Charles, Qiu, Jianming, Wang, Chunlin, Deng, Xutao, Delwart, Eric
Publicado 2013

Diagnosis of Neuroinvasive Astrovirus Infection in an Immunocompromised Adult With Encephalitis by Unbiased Next-Generation Sequencing

por Naccache, Samia N., Peggs, Karl S., Mattes, Frank M., Phadke, Rahul, Garson, Jeremy A., Grant, Paul, Samayoa, Erik, Federman, Scot, Miller, Steve, Lunn, Michael P., Gant, Vanya, Chiu, Charles Y.
Publicado 2015

Distinct Zika Virus Lineage in Salvador, Bahia, Brazil

por Naccache, Samia N., Thézé, Julien, Sardi, Silvia I., Somasekar, Sneha, Greninger, Alexander L., Bandeira, Antonio C., Campos, Gubio S., Tauro, Laura B., Faria, Nuno R., Pybus, Oliver G., Chiu, Charles Y.
Publicado 2016

Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection

por Berg, Michael G., Lee, Deanna, Coller, Kelly, Frankel, Matthew, Aronsohn, Andrew, Cheng, Kevin, Forberg, Kenn, Marcinkus, Marilee, Naccache, Samia N., Dawson, George, Brennan, Catherine, Jensen, Donald M., Hackett, John, Chiu, Charles Y.
Publicado 2015

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing

por Greninger, Alexander L., Messacar, Kevin, Dunnebacke, Thelma, Naccache, Samia N., Federman, Scot, Bouquet, Jerome, Mirsky, David, Nomura, Yosuke, Yagi, Shigeo, Glaser, Carol, Vollmer, Michael, Press, Craig A., Klenschmidt-DeMasters, Bette K., Dominguez, Samuel R., Chiu, Charles Y.
Publicado 2015

Erratum to: Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing

por Greninger, Alexander L., Messacar, Kevin, Dunnebacke, Thelma, Naccache, Samia N., Federman, Scot, Bouquet, Jerome, Mirsky, David, Nomura, Yosuke, Yagi, Shigeo, Glaser, Carol, Vollmer, Michael, Press, Craig A., Kleinschmidt-DeMasters, Bette K., Dominguez, Samuel R., Chiu, Charles Y.
Publicado 2016

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

por Greninger, Alexander L., Naccache, Samia N., Federman, Scot, Yu, Guixia, Mbala, Placide, Bres, Vanessa, Stryke, Doug, Bouquet, Jerome, Somasekar, Sneha, Linnen, Jeffrey M., Dodd, Roger, Mulembakani, Prime, Schneider, Bradley S., Muyembe-Tamfum, Jean-Jacques, Stramer, Susan L., Chiu, Charles Y.
Publicado 2015

Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016

por Chiu, Charles Y., Coffey, Lark L., Murkey, Jamie, Symmes, Kelly, Sample, Hannah A., Wilson, Michael R., Naccache, Samia N., Arevalo, Shaun, Somasekar, Sneha, Federman, Scot, Stryke, Doug, Vespa, Paul, Schiller, Gary, Messenger, Sharon, Humphries, Romney, Miller, Steve, Klausner, Jeffrey D.
Publicado 2017

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

por Miller, Steve, Naccache, Samia N., Samayoa, Erik, Messacar, Kevin, Arevalo, Shaun, Federman, Scot, Stryke, Doug, Pham, Elizabeth, Fung, Becky, Bolosky, William J., Ingebrigtsen, Danielle, Lorizio, Walter, Paff, Sandra M., Leake, John A., Pesano, Rick, DeBiasi, Roberta, Dominguez, Samuel, Chiu, Charles Y.
Publicado 2019

Metagenomic Next-Generation Sequencing of the 2014 Ebola Virus Disease Outbreak in the Democratic Republic of the Congo

por Li, Tony, Mbala-Kingebeni, Placide, Naccache, Samia N., Thézé, Julien, Bouquet, Jerome, Federman, Scot, Somasekar, Sneha, Yu, Guixia, Sanchez-San Martin, Claudia, Achari, Asmeeta, Schneider, Bradley S., Rimoin, Anne W., Rambaut, Andrew, Nsio, Justus, Mulembakani, Prime, Ahuka-Mundeke, Steve, Kapetshi, Jimmy, Pybus, Oliver G., Muyembe-Tamfum, Jean-Jacques, Chiu, Charles Y.
Publicado 2019

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

por Naccache, Samia N., Federman, Scot, Veeraraghavan, Narayanan, Zaharia, Matei, Lee, Deanna, Samayoa, Erik, Bouquet, Jerome, Greninger, Alexander L., Luk, Ka-Cheung, Enge, Barryett, Wadford, Debra A., Messenger, Sharon L., Genrich, Gillian L., Pellegrino, Kristen, Grard, Gilda, Leroy, Eric, Schneider, Bradley S., Fair, Joseph N., Martínez, Miguel A., Isa, Pavel, Crump, John A., DeRisi, Joseph L., Sittler, Taylor, Hackett, John, Miller, Steve, Chiu, Charles Y.
Publicado 2014

Reinfection with SARS-CoV-2 and Failure of Humoral Immunity: a case report.

por Goldman, Jason D., Wang, Kai, Röltgen, Katharina, Nielsen, Sandra C. A., Roach, Jared C., Naccache, Samia N., Yang, Fan, Wirz, Oliver F., Yost, Kathryn E., Lee, Ji-Yeun, Chun, Kelly, Wrin, Terri, Petropoulos, Christos J., Lee, Inyoul, Fallen, Shannon, Manner, Paula M., Wallick, Julie A., Algren, Heather A., Murray, Kim M., Su, Yapeng, Hadlock, Jennifer, Jeharajah, Joshua, Berrington, William R., Pappas, George P., Nyatsatsang, Sonam T., Greninger, Alexander L., Satpathy, Ansuman T., Pauk, John S., Boyd, Scott D., Heath, James R.
Publicado 2020